Table 2 Significant and robust QTLs regulating three agronomic traits identified and mapped on an ultra-high density intra-specific genetic linkage map of chickpea
Linkage groups (LGs) | QTL identity | LGs | Marker intervals with genetic positions (cM) | Peak LOD score | Phenotypic variance explained (PVE R2%) by QTLs | Traits associated | Additive effect |
|---|---|---|---|---|---|---|---|
Ca_Desi_LG01 | qSW1.1 | LG_1 | Ca_Desi_SNP_1 (0) to Ca_Desi_SNP_2 (0.146) | 13.5 | 29.8 | SW | 4.5 |
qPN1.1 | LG_1 | Ca_Desi_SNP_15 (5.54) to Ca_Desi_SNP_17 (7.518) | 8.2 | 22.4 | PN | 3.2 | |
qPN1.2 | LG_1 | Ca_Desi_SNP_40 (13.733) to Ca_Desi_SNP_42 (14.48) | 8.31 | 22.8 | PN | 2.8 | |
qPN1.3 | LG_1 | Ca_Desi_SNP_250 (34.293) to Ca_Desi_SNP_252 (34.453) | 8.11 | 22 | PN | 1.9 | |
qSN1.1 | LG_1 | Ca_Desi_SNP_486 (54.514) to Ca_Desi_SNP_488 (54.597) | 10.95 | 29.6 | SN | 2.7 | |
qSW1.2 | LG_1 | Ca_Desi_SNP_513 (56.043) to Ca_Desi_SNP_515 (56.158) | 13 | 28.2 | SW | 3.2 | |
qPN1.4 | LG_1 | Ca_Desi_SNP_591 (61.419) to Ca_Desi_SNP_595 (61.738) | 14 | 35 | PN | 5.1 | |
qSW1.3 | LG_1 | Ca_Desi_SNP_636 (64.655) to Ca_Desi_SNP_638 (64.817) | 7.39 | 23.2 | SW | 4.5 | |
qPN1.5 | LG_1 | Ca_Desi_SNP_655 (67.106) to Ca_Desi_SNP_657 (67.22) | 7.25 | 22.6 | PN | 3.8 | |
Ca_Desi_LG02 | qSN2.1 | LG_2 | Ca_Desi_SNP_752 (9.224) to Ca_Desi_SNP_754 (10.101) | 8.91 | 25.4 | SN | 2.5 |
qSN2.2 | LG_2 | Ca_Desi_SNP_902 (39.18) to Ca_Desi_SNP_904 (39.252) | 8.42 | 23.3 | SN | 2.8 | |
qPN2.1 | LG_2 | Ca_Desi_SNP_946 (48.4) to Ca_Desi_SNP_948 (48.982) | 10.56 | 28 | PN | 3.4 | |
qPN2.2 | LG_2 | Ca_Desi_SNP_1012 (58.324) to Ca_Desi_SNP_1014 (58.377) | 8.12 | 22 | PN | 4.7 | |
qSN2.3 | LG_2 | Ca_Desi_SNP_1113 (80.057) to Ca_Desi_SNP_1115 (81.06) | 10.72 | 32.5 | SN | 4.2 | |
Ca_Desi_LG04 | qPN4.1 | LG_4 | Ca_Desi_SNP_1842 (42.717) to Ca_Desi_SNP_1844 (43.31) | 9.16 | 22.2 | PN | 3.8 |
qPN4.2 | LG_4 | Ca_Desi_SNP_2011 (51.285) to Ca_Desi_SNP_2013 (51.308) | 8.32 | 22 | PN | 3.4 | |
qPN4.3 | LG_4 | Ca_Desi_SNP_2023 (51.702) to Ca_Desi_SNP_2025 (51.717) | 9.74 | 24.7 | PN | 4.3 | |
qSW4.1 | LG_4 | Ca_Desi_SNP_2088 (56.304) to Ca_Desi_SNP_2090 (56.442) | 9.02 | 21.6 | SW | 2.6 | |
Ca_Desi_LG05 | qSN5.1 | LG_5 | Ca_Desi_SNP_2336 (23.792) to Ca_Desi_SNP_2338 (24.875) | 12.6 | 38.1 | SN | 6.7 |
qSW5.1 | LG_5 | Ca_Desi_SNP_2337 (23.805) to Ca_Desi_SNP_2338 (24.875) | 14.5 | 39.7 | SW | 8.9 | |
qSN5.2 | LG_5 | Ca_Desi_SNP_2557 (76.802) to Ca_Desi_SNP_2559 (77.188) | 10.5 | 24.5 | SN | 1.9 | |
Ca_Desi_LG06 | qSW6.1 | LG_6 | Ca_Desi_SNP_2608 (10.981) to Ca_Desi_SNP_2610 (11.552) | 7.8 | 17.9 | SW | 2.6 |
qSW6.2 | LG_6 | Ca_Desi_SNP_2902 (56.733) to Ca_Desi_SNP_2904 (57.25) | 8.37 | 21.8 | SW | 3.5 | |
qPN6.1 | LG_6 | Ca_Desi_SNP_2903 (56.755) to Ca_Desi_SNP_2907 (57.422) | 7.86 | 20.7 | PN | 3.8 | |
qSW6.3 | LG_6 | Ca_Desi_SNP_2931 (62.038) to Ca_Desi_SNP_2933 (62.381) | 11.62 | 25.7 | SW | 4.6 | |
qPN6.2 | LG_6 | Ca_Desi_SNP_2993 (77.157) to Ca_Desi_SNP_2995 (78.929) | 9.22 | 26.4 | PN | 5.2 | |
Ca_Desi_LG07 | qSW7.1 | LG_7 | Ca_Desi_SNP_3006 (0) to Ca_Desi_SNP_3007 (1.014) | 8.28 | 22.7 | SW | 3.6 |
qPN7.1 | LG_7 | Ca_Desi_SNP_3089 (24.832) to Ca_Desi_SNP_3091 (24.848) | 8.35 | 22.5 | PN | 4.3 | |
qPN7.2 | LG_7 | Ca_Desi_SNP_3157 (34.458) to Ca_Desi_SNP_3159 (34.858) | 8.28 | 22.1 | PN | 3.9 | |
qPN7.3 | LG_7 | Ca_Desi_SNP_3230 (44.792) to Ca_Desi_SNP_3232 (45.282) | 9.65 | 24.3 | PN | 4.5 | |
qPN7.4 | LG_7 | Ca_Desi_SNP_3269 (54.679) to Ca_Desi_SNP_3271 (54.792) | 10.45 | 27.6 | PN | 5.1 | |
Ca_Desi_LG08 | qSW8.1 | LG_8 | Ca_Desi_SNP_3387 (19.508) to Ca_Desi_SNP_3389 (19.651) | 9.06 | 21.7 | SW | 3.9 |
qSN8.1 | LG_8 | Ca_Desi_SNP_3394 (20.582) to Ca_Desi_SNP_3396 (21.005) | 7.44 | 21.7 | SN | 2.8 | |
qSN8.2 | LG_8 | Ca_Desi_SNP_3536 (54.055) to Ca_Desi_SNP_3538 (54.218) | 8.45 | 27.6 | SN | 4.6 | |
qPN8.1 | LG_8 | Ca_Desi_SNP_3555 (57.041) to Ca_Desi_SNP_3561 (58.066) | 9.21 | 22.4 | PN | 5.1 |
