Table 2 SNP markers significantly associated with growth and wood properties in the association population.
From: Association genetics in Populus reveals the interactions between Pt-miR397a and its target genes
Trait | Locus | Genotype | P value | R 2 (%) |
|---|---|---|---|---|
Lignin content | Pt-LEA-SNP29 | A > G | 0.001 | 11.86 |
Lignin content | Pt-HSP40-SNP01 | C > A | 0.006 | 8.66 |
Lignin content | Pt-LEA-SNP32 | T > A | 0.0033 | 12.57 |
Holocellulose content | Pt-SPRY-SNP08 | T > C | 0.0013 | 11.53 |
α-cellulose content | Pt-miR397a-SNP50 | C > T | 0.0032 | 9.90 |
α-cellulose content | Pt-SPRY-SNP08 | T > C | 0.0028 | 10.16 |
α-cellulose content | Pt-LEA-SNP33 | C > A | 0.0098 | 10.66 |
Fiber length | Pt-LEA-SNP32 | T > A | 3.12E-04 | 17.15 |
Fiber length | Pt-LEA-SNP33 | C > A | 0.004 | 12.25 |
Fiber width | Pt-LEA-SNP32 | T > A | 0.006 | 11.37 |
Microfiber angle | Pt-LAC20-SNP15 | A > G | 0.0046 | 12.34 |
Microfiber angle | Pt-LEA-SNP02 | A > T | 0.0056 | 9.23 |
Tree diameter at breast height | Pt-LAC13-SNP17 | A > G | 0.0063 | 8.53 |
Tree diameter at breast height | Pt-LAC18-SNP01 | A > G | 0.0034 | 9.76 |
Tree diameter at breast height | Pt-miR397a-SNP35 | A > G | 0.0048 | 9.07 |
Tree diameter at breast height | Pt-miR397a-SNP46 | A > G | 0.0041 | 12.37 |
Tree diameter at breast height | Pt-LAC13-SNP12 | A > T | 0.0058 | 11.66 |
Tree diameter at breast height | Pt-LAC13-SNP18 | A > T | 0.0076 | 11.06 |
Tree diameter at breast height | Pt-HSP40-SNP05 | G > T | 0.0052 | 11.90 |
Tree diameter at breast height | Pt-SPRY-SNP11 | C > G | 2.20E-04 | 15.06 |
Tree diameter at breast height | Pt-LAC13-SNP01 | C > T | 0.0038 | 9.55 |
Tree diameter at breast height | Pt-miR397a-SNP32 | C > T | 0.0047 | 9.13 |
Tree diameter at breast height | Pt-LAC13-SNP13 | T > C | 7.29E-04 | 12.75 |
Tree diameter at breast height | Pt-LAC18-SNP04 | T > C | 0.0033 | 9.79 |
Tree diameter at breast height | Pt-miR397a-SNP38 | T > C | 0.0045 | 9.21 |
Tree diameter at breast height | Pt-miR397a-SNP33 | T > G | 0.0048 | 9.07 |
Tree height | Pt-LAC13-SNP18 | A > T | 1.22E-04 | 19.45 |
Tree height | Pt-HSP40-SNP05 | G > T | 1.69E-04 | 18.82 |
Tree height | Pt-LAC13-SNP13 | T > C | 0.0091 | 7.80 |
Stem volume | Pt-LAC13-SNP17 | A > G | 0.0065 | 8.35 |
Stem volume | Pt-LAC18-SNP01 | A > G | 0.0037 | 9.47 |
Stem volume | Pt-miR397a-SNP35 | A > G | 0.0045 | 9.06 |
Stem volume | Pt-miR397a-SNP46 | A > G | 2.39E-04 | 17.94 |
Stem volume | Pt-LAC13-SNP12 | A > T | 0.0043 | 12.15 |
Stem volume | Pt-miR397a-SNP18 | A > T | 0.007 | 8.43 |
Stem volume | Pt-SPRY-SNP11 | C > G | 9.30E-04 | 12.13 |
Stem volume | Pt-LAC13-SNP01 | C > T | 0.0031 | 9.83 |
Stem volume | Pt-miR397a-SNP32 | C > T | 0.0055 | 8.69 |
Stem volume | Pt-LAC13-SNP13 | T > C | 0.002 | 10.62 |
Stem volume | Pt-LAC18-SNP04 | T > C | 0.0046 | 9.05 |
Stem volume | Pt-miR397a-SNP38 | T > C | 0.0044 | 9.13 |
Stem volume | Pt-miR397a-SNP33 | T > G | 0.0045 | 9.06 |
