Table 3 Genome-wide significant SNPs with 7 meat quality traits.

From: Copy number variation-based genome wide association study reveals additional variants contributing to meat quality in Swine

SNPs

Chromosome

Position

pH6

a6*

a24*

SFN

IMF

Marbling

Moisture

H3GA0056170

NA

NA

1.98E-05

3.63E-02

4.05E-01

4.72E-01

1.32E-02

5.60E-07

4.99E-04

ALGA0107518

NA

NA

3.06E-05

3.26E-02

3.53E-01

5.40E-01

1.87E-02

9.67E-07

6.37E-04

MARC0004712

NA

NA

7.55E-06

3.18E-03

2.02E-01

6.69E-01

8.12E-03

9.85E-07

4.59E-04

ASGA0085522

NA

NA

6.12E-05

5.85E-03

6.53E-02

2.29E-01

1.63E-03

2.00E-06

4.21E-04

ASGA0008649

2

5642038

6.81E-01

6.94E-01

2.02E-01

4.41E-06

3.55E-01

7.34E-02

4.04E-01

ALGA0066945

3

139930024

3.76E-05

3.56E-07

2.07E-06

3.07E-01

3.60E-11

1.08E-09

9.61E-08

ASGA0054854

12

47528805

7.68E-04

1.07E-04

2.48E-03

2.83E-01

2.69E-06

2.51E-06

4.89E-04

M1GA0016908

12

52692402

1.43E-02

2.12E-05

8.99E-05

4.67E-02

3.22E-06

3.29E-04

3.09E-04

ASGA0102838

12

55575876

9.77E-05

4.29E-07

2.72E-06

6.29E-01

3.15E-09

2.83E-08

3.50E-06

ASGA0089507

12

57195654

1.16E-04

7.74E-06

1.83E-03

3.19E-01

2.89E-06

5.77E-07

2.26E-05

ASGA0094812

12

57394039

2.54E-06

6.88E-07

4.72E-05

6.31E-01

1.53E-09

2.73E-11

1.57E-09

ASGA0100525

12

57622308

1.52E-05

1.26E-03

3.87E-02

8.99E-01

8.85E-03

2.49E-06

2.24E-03

MARC0027759

12

57625866

2.05E-06

8.94E-04

4.36E-02

6.47E-01

4.41E-03

4.37E-06

1.34E-03

ALGA0067072

12

57831831

1.06E-05

2.79E-03

8.39E-02

7.39E-01

9.81E-03

3.11E-06

1.11E-03

ALGA0067099

12

57950908

8.25E-06

3.77E-03

2.51E-01

7.41E-01

1.10E-02

1.39E-06

6.56E-04

ALGA0067119

12

58078076

1.29E-01

8.15E-05

7.98E-05

2.48E-02

9.53E-07

2.17E-04

2.80E-05

DIAS0000861

12

58132333

1.35E-05

3.68E-03

1.95E-01

5.33E-01

5.17E-03

7.24E-07

6.27E-04

MARC0017000

12

58347308

1.29E-05

1.85E-05

1.25E-03

4.45E-01

1.79E-08

3.81E-10

9.99E-09

MARC0030345

12

58934290

5.42E-06

2.77E-03

1.50E-01

8.19E-01

1.12E-02

1.49E-06

1.85E-03

MARC0009546

12

58942845

8.62E-06

3.07E-03

1.72E-01

8.88E-01

1.27E-02

1.07E-06

9.41E-04

M1GA0017195

12

60768750

2.67E-02

1.64E-02

9.28E-02

3.86E-02

1.03E-05

3.55E-06

1.48E-05

ASGA0084548

12

60923280

1.05E-03

4.42E-04

1.28E-02

6.38E-02

1.68E-04

6.17E-07

7.74E-05

ASGA0099873

12

61061041

1.87E-04

2.82E-04

9.06E-03

3.86E-02

5.68E-05

1.61E-07

2.12E-04

ALGA0109745

12

61142611

1.51E-03

1.61E-05

3.47E-04

1.25E-01

8.42E-07

3.80E-08

1.94E-06

  1. 1. p values < 4.56E-6 after FDR correction were shown in bold and italic.
  2. 2. pH6, a6*, a24*, SFN and IMF were stand for pH value at 6 h postmortem, color a* at 6 h postmortem, color a* at 24 h postmortem, share force and intramuscular fat.
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