Table 1 Summary statistics of clean reads in the rhizome transcriptomes of lotus.
RT1 | RT2 | RT3 | ZT1 | ZT2 | ZT3 | |
|---|---|---|---|---|---|---|
Total reads | 49292444 | 64923252 | 58358900 | 63523030 | 63701924 | 57705146 |
Base number (G) | 4.92 | 6.5 | 5.84 | 6.35 | 6.37 | 5.77 |
High-quality reads(%) | 97.37 | 97.13 | 97.25 | 97.34 | 97.22 | 97.3 |
Mapped reads | 45674271 | 59897657 | 42906546 | 59166507 | 55147398 | 53435623 |
Exon (%) | 84 | 85.9 | 77.6 | 83.9 | 85.1 | 75.3 |
Intron (%) | 3.2 | 2.6 | 4.8 | 3.8 | 2.8 | 9.7 |
Intergenic (%) | 12.7 | 11.5 | 17.6 | 12.2 | 12.1 | 15 |
Number of transcript | 24832 | 24832 | 23871 | 24926 | 21937 | 22843 |
Number of novel transcript | 2536 | 2524 | 2457 | 2581 | 2550 | 2427 |
