Table 2 The genes involving the photoperiod pathway were related to rhizome formation identified previously.

From: Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)

Gene name

Gene ID

RPKM value

RT1

RT2

RT3

ZT1

ZT2

ZT3

PHYB

NNU_14452

4.92

9.46

5.22

11.37

2.65

8.64

GI

NNU_10096

19.29

7.17

19.11

36.84

32.79

56.89

GI

NNU_28780

5.96

1.81

19.48

19.32

16.31

8.36

COL1

NNU_08202

6.01

15.12

0.41

2.21

0.47

0.05

COL2

NNU_01086

161.43

65.55

147.69

112.54

25.26

351.50

COL2

NNU_17996

0.45

0.41

1.22

1.02

0.16

4.13

COL3

NNU_26112

6.72

10.56

21.27

1.90

3.33

16.63

COL4

NNU_05557

2.34

0.15

4.22

0.42

0.55

7.47

COL5

NNU_00495

202.91

185.92

61.01

80.37

140.92

187.22

COL5

NNU_09266

207.42

138.59

122.22

115.34

32.78

213.85

COL5

NNU_09327

61.53

20.91

125.17

22.32

6.12

70.12

COL5

NNU_13557

60.22

58.32

354.56

199.28

93.83

28.92

COL7

NNU_27522

2.66

1.08

3.96

2.35

0.47

8.45

COL7

NNU_17959

3.25

3.98

0.75

0.54

2.50

0.76

COL9

NNU_24588

4.53

6.20

1.43

5.19

2.19

2.16

COL10

NNU_06942

2.27

0.79

5.76

3.07

0.49

16.30

COL13

NNU_24804

13.76

3.51

42.75

19.14

4.74

125.19

COL13

NNU_02257

0.59

0.07

6.16

0.20

1.75

0.50

COL14

NNU_03991

28.29

35.66

23.76

37.94

14.79

29.39

COL14

NNU_03189

11.73

20.79

0.35

7.45

6.73

0.19

COL14

NNU_17798

1.58

2.19

1.63

1.66

1.09

3.80

COL16

NNU_01236

127.71

64.57

46.21

71.59

32.65

76.51

COL16

NNU_02963

5.62

2.42

0.09

2.19

0.90

0.05

COL16

NNU_12644

14.34

3.21

0.20

2.64

0.24

0.28

FT

NNU_20154

4.97

4.34

3.86

4.89

4.42

1.46

FT

NNU_26362

7.06

5.35

0.48

1.95

0.24

0.14

FT

NNU_15765

3.35

0.00

8.90

0.85

3.93

1.83

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