Figure 4
From: MSIseq: Software for Assessing Microsatellite Instability from Catalogs of Somatic Mutations
30× depth provides adequate somatic variant calls for NGSclassifier.
Shown are MSI-status classification receiver operating characteristic (ROC) curves. S.ind was calculated from the mutations list generated by a GATK pipeline similar that used in reference 18. Full-depth or down-sampled exome BAM files from 22 tumor-normal pairs were analyzed. AUC, area under the curve.
