Table 3 Predicted epitopes of the reference strains for each genotype.
From: Molecular Evolution of the Capsid Gene in Norovirus Genogroup I
Genotype | Strain (GenBank accession No.) | Position | Predicted epitopes |
|---|---|---|---|
GI.1 | Norwalk/1968/US (M87661) | 32–43 | AMDPVAGSSTAV |
316–325 | APIGFPDLGG | ||
377–388 | SPPSHPSGSQVD | ||
480–496 | FLTCVPNGASSGPQQLP | ||
GI.2 | Southampton/1991/UK (L07418) | 33–45 | MEPVAGPTTAVAT |
413–423 | AANLAPPVFPP | ||
437–448 | PGPNNRSAPNDV | ||
501–511 | NGVGAGPQQLP | ||
GI.3 | Desert Shield395/1990/UK (U04469) | 314–326 | YHAFESPAPIGFP |
GI.4 | Chiba 407/1987/JP (AB022679) | 29–43 | DPIPIDPVAGSSTAL |
157–167 | PVEVPLEDVRN | ||
317–327 | APAPAGFPDLG | ||
386–397 | TSPPSDSGGANT | ||
435–445 | IPGPNQSGSPN | ||
501–510 | SSSTGPQQLP | ||
529–539 | PVGTAGPARGR | ||
GI.5 | Musgrove/1989/UK (AJ277614) | 9–19 | TPSADGANGAG |
29–41 | EPLPLDPVAGAST | ||
319–329 | APTGFPDLGTS | ||
436–447 | IPGPNTAHKPNL | ||
GI.6 | BS5/1997/DE (AF093797) | 312–325 | PFVPLESPAPVGFP |
GI.7 | Winchester/1994/UK (AJ277609) | 28–41 | AEPLPLEPVVGAAT |
189–200 | LRAGGASSGTDP | ||
314–326 | YHAFESPAPLGFP | ||
392–402 | GARVDPWKIPS | ||
495–506 | PNTGGGPQNLPT | ||
GI.8 | Boxer/2001/US (AF538679) | 189–200 | LRSGGASSGTDP |
342–353 | PTELSTGDPSGK | ||
441–453 | TVSNPKVPCTLPQ | ||
499–509 | PNAGGGPQTLP | ||
GI.9 | Vancouver730/2004/CAN (HQ637267) | 20–33 | QLVPENNNTSEPIN |
318–334 | HAFESPAPLGFPDFGDG | ||
351–366 | NDPVVVGNVQPYNPQF | ||
374–385 | VVENPTPDQVAT |
