Table 1 Data collection and refinement statistics.

From: An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography

 

XFEL (SIRAS)

SR (SAD)

Native

Hg-derivative

Hg-derivative

Beamline

SACLA BL3

SPring-8 BL26B2

Wavelength (Å)

0.981

0.984

0.9839

Beam energy* or photon flux

30.0 μJ/pulse

86.4 μJ/pulse

2.0 × 1010 phs/s

X-ray detector

MPCCD (short working distance octal)

MX225

Space group

P212121

P212121

P212121

Unit cell (a, b, c; Å)

48.2, 77.6, 84.8

48.1, 77.5, 84.8

48.11, 77.18, 84.92

Resolution range (Å)

10–1.50 (1.56–1.50)

25–1.60 (1.66–1.60)

40–1.70 (1.80–1.70)

Completeness (%)

100 (100)

100 (100)

99.8 (99.3)

SFX multiplicity

222.2 (196)

106.2 (44)

n/a

Redundancy

n/a

n/a

3.9 (3.8)

No. crystals

10,792

10,000

1

Rsplit,§

0.2727 (1.671)

0.3727 (5.772)

n/a

Rmeas,

n/a

n/a

0.101 (0.728)

,

2.56 (0.63)

1.82 (0.19)

10.58 (2.15)

CC1/2,#

0.893 (0.1988)

0.835 (0.0279)

0.997 (0.696)

CCano**

n/a

−0.066

0.16

Refinement

Rwork, Rfree

0.1845, 0.2318

0.2021, 0.2354

0.1444, 0.1776

No. atoms (mean B-factor)

 protein

2,427 (27.0)

2,403 (27.8)

2,456 (22.6)

 water

188 (39.9)

164 (35.6)

158 (35.0)

 ligand/ion

9 (32.6)

9 (30.6)

9 (44.6)

 Hg

n/a

2 (25.6)

3 (21.8)

r.m.s. deviation from ideal

 bond lengths (Å)

0.011

0.014

0.019

 bond angles (°)

1.346

1.452

1.778

Ramachandran plot

 Favored (%)

97.76

95.78

95.25

 Allowed (%)

2.24

4.22

4.43

 Outlier (%)

0

0

0.32

  1. *XFEL beam energy calculated from the reflectivity or the transmittance of the components between the beam monitor and the sample position (attenuator, KB-mirrors, Be windows and air path).
  2. Values in parenthesis are for the highest resolution shell.
  3. Note that σ(I) estimation method is different between CrystFEL and XDS and they cannot be compared.
  4. §View full size image12.
  5. View full size image40.
  6. #CC1/2 is a correlation coefficient of intensities between randomly-halved datasets41.
  7. **CCano is a correlation coefficient of anomalous intensity differences between randomly-halved datasets.