Figure 4

Biosynthesis pathway of JA and transcriptional responses in Brachypodium and Arabidopsis.

Homologs of jasmonate biosynthetic genes in Brachypodium were retrieved using the BLAST software. Brachypodium genes are shown in red and Arabidopsis genes in black. Stat represents the p-value of the microarray experiment. Arabidopsis treated by MJ for 3 hours¹¹ and FDR of RNA-seq data when the count of MJ treatment was compared with all other treatments. log₂ ratio represents the gene expression ratio between read counts from the MJ treatment divided by the average read counts from all other treatments. log₂ ratio is hatched in red if genes are up-regulated. cpm represents log₂ scaled read count per million reads of RNA-seq data from all treatments.