Figure 1
Characterization of the 30 longest contigs derived from de novo genome assembly using 1x and 0.05x haploid genome equivalents of rice and ginseng, respectively.
(a) Classification based on best hit (Supplementary Tables S1 and S2 online). Number of contigs and percent coverage of cp, nR, mt and other sequences are presented above the bars. (b,c) Alignment of five and three contigs covering the complete cp genome sequences of rice (b) and ginseng (c), respectively. The contig numbers are indicated under the contigs and hit positions in parentheses are under the reference cp genome sequences for rice (GU592207) and ginseng (NC_006290). Sequence errors identified in the initial contigs are denoted by arrows. The overall structure of the cp genome is denoted with different colored bars: green, blue and yellow, for LSC, IRs and SSC, respectively. Mapping of 100x raw reads is shown above alignment. (d) Read mapping of 2x-depth 10-kb mate-pair reads on the assembled sequence. Purple and orange mate information indicates the proper range for 10-kb mate pairs.
