Table 1 Major variations of HPV-16 full length L1 sequence in cervical cancer.
S. No. | V1 | V2 | V3 | V4 | V5 | V6 | V7 | V8 | V9 | V10 | V11 | V12 | V13 | V14 | V15 | V16 | V16 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Position | 6163 | 6171 | 6240 | 6245 | 6314 | 6432 | 6557 | 6693 | 6719 | 6852 | 6863 | 6901 | 6590 | 6968 | 6992 | 7058 | 7058 |
Ref N | C | G | C | T | A | A | C | A | G | C | C | — | GAT | C | G | G | G |
A | A | A | — | — | — | — | — | — | A | — | — | Ins ATC | DELETED | — | A | A | — |
T | — | — | — | — | — | — | T | — | — | T | T | T | — | — | T | ||
G | — | — | G | — | G | G | — | — | — | — | — | — | — | — | — | ||
C | — | — | — | C | — | — | — | C | — | — | — | — | — | — | — | ||
% of Sample | 24.13 | 17.24 | 100 | 24.13 | 24.13 | 96.55 | 24.13 | 24.13 | 24.13 | 34.48 | 24.13 | 100 | 100 | 24.13 | 24.13 | 10.34 | 24.13 |
202 | 205 | 228 | — | — | 292 | — | 379 | — | — | 435 | 448 | 465 | — | — | — | 500 | |
Amino Acid | T—N | A—T | H—D | — | — | T-A | — | T-P | — | — | P-L | INS- S | DEL-D | — | — | — | L-F |
Polar-Polar | Non-Polar-Polar | Polar-Polar | Polar-Non-Polar | Polar-Non Polar | Non Polar-Non Polar | Polar | Polar | Non Polar-Non Polar | |||||||||
Hydrophobacity |
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