Table 1 Estimates of genetic diversity and molecular variance for chlorotype sequences.

From: The role of East Asian monsoon system in shaping population divergence and dynamics of a constructive desert shrub Reaumuria soongarica

Regions

H S

H T

G ST

N ST

Source of variation

d.f.

SS

VC

PV (%)

Fixation index

θw(×10−3)

Ne(×105)

Neutrality tests

Fu’s Fs

Tajiam’s D

TaD

0.375 (0.086)

0.747 (0.090)

0.498 (0.171)

0.501 (0.196)

Among populations

5

14.46

0.28

29.20

FST =0.292*

0.7

6.67

−1.60 (0.220)

−1.72 (0.021)

Within populations

42

28.25

0.67

70.80

Total

47

42.71

0.95

 

GuD

0.083 (0.083)

0.708 (0.175)

0.882 (0.162)

0.985 (0.022)*

Among populations

2

90.75

5.67

99.27

FST =0.993*

0.6

5.75

12.41 (0.998)

1.78 (0.962)

Within populations

21

0.88

0.04

0.73

Total

23

91.63

5.71

 

BJ-TD

0.630 (0.062)

0.916 (0.023)*

0.313 (0.066)

0.402 (0.058)

Among populations

15

84.42

0.56

33.63

FST =0.336*

1.4

14.48

−12.13 (<.0001)

−1.55 (0.035)

Within populations

112

124.75

1.11

66.37

Total

127

209.17

1.68

 

QB

0.629 (0.045)*

0.802 (0.056)

0.216 (0.040)*

0.219 (0.009)*

Among populations

4

40.35

0.82

19.09

FST =0.191*

0.6

6.37

9.42 (0.993)

1.89 (0.973)

Within populations

35

122.25

3.49

80.91

Total

39

162.60

4.32

 

KD-GG

0.179 (0.112)

0.997 (0.047)*

0.821 (0.113)

0.923 (0.078)

Among populations

3

105.81

4.39

96.09

FST =0.961*

0. 6

6.67

6.72 (0.980)

1.00 (0.877)

Within populations

28

5.00

0.18

3.91

Total

31

110.81

4.57

 

TaD, GuD, BJ-TD, KD-GG and QB versus

    

Among groups

4

485.59

2.29

48.04

FCT =0.524*

    

Among populations within groups

29

335.79

1.30

27.22

FSC =0.753*

    

Within populations

238

281.13

1.18

24.74

FST =0.480*

Total

0.527 (0.048)*

0.934 (0.011)*

0.436 (0.041)*

0.612 (0.044)*

 

271

1102.50

4.77

  

1.8

18.28

−4.68 (0.192)

−1.27 (0.070)

  1. HS, average gene diversity within populations; HT, total gene diversity; GST, interpopulation differentiation; NST, number of substitution types; d.f., degrees of freedom; SS, sum of squares; VC, variance component; FST, correlation within populations relative to total; FSC, correlation of haplotypes within groups relative to the total; FCT, correlation within populations relative to groups; θw, theta per site; Ne, estimates of the effective population size; P-values are enclosed in the parenthesis; *P < 0.05.
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