Table 1 The number of NBS-encoding genes in the Chinese chestnut genome.
From: Species-specific duplications of NBS-encoding genes in Chinese chestnut (Castanea mollissima)
Predicted protein domains | Letter code | Castanea mollissima | Populus trichocarpaa |
|---|---|---|---|
NBS-encoding genes | 519 | 416 | |
NBS-LRR type | 374 | 330 | |
TIR-NBS-LRR | TNL | 22 | 78 |
non-TIR-NBS-LRR | non-TNL | 352 | 252 |
CC-NBS-LRR | CNL | 32 | 120 |
X-NBS-LRR | XNL | 320 | 132 |
NBS | 145 | 86 | |
TIR-NBS | TN | 5 | 10 |
non-TIR-NBS | non-TN | 140 | 76 |
CC-NBS | CN | 96 | 14 |
X-NBS | XN | 44 | 62 |
genes from the entire genome | 38081 | 45555 | |
Proportion of NBS-encoding genes | 1.36% | 0.91% | |
Proportion of NBS-LRR genes | 0.98% | 0.72% | |
Proportion of TIR-NBS-LRR genes | 0.06% | 0.17% | |
Proportion of non-TIR-NBS-LRR genes | 0.92% | 0.55% | |
Average exon of all genes | 4.37 | 2.35 | |
Average exon of TIR-NBS-LRR | 2.50 | 3.5 | |
Average exon of non-TIR-NBS-LRR | 2.93 | 2.23 | |
Average exon of CC-NBS-LRR | 3.32 | –b | |
Average exon of NBS-encoding genes | 2.66 | – | |
Average exon of NBS-LRR genes | 2.90 | – |
