Table 2 Characteristics of the six species analyzed for population genetics by MIG-seq.
Species | Collection sites | Total no. of input reads for Stacks (min.–max.) | No. of putative loci (Stacks) | No. of SNPs | |
|---|---|---|---|---|---|
A | B | ||||
Nameko mushroom (Pholiota microspora) | Cultivated varieties from Miyagi Prefecture | Wild strains from Fukushima Prefecture | 1,814,441 (138,636–301,781) | 505 | 31 |
Calanoida copepod (Eodiaptomus japonicus) | Takashima, Shiga N35°15′, E136°4′ | Ono, Hyogo N34°50′, E134°53′ | 3,195,755 (273,699–494,513) | 3,212 | 115 |
Japanese common sea cucumber (Apostichopus japonicus) | Red types from Onagawa, Miyagi N38°25′, E141°29′ | Green types from Onagawa, Miyagi N38°25′, E141°29′ | 9,892,527 (998,736–1,497,056) | 3,409 | 125 |
Predatory sea snail (Laguncula pulchella) | Matsukawa-ura, Fukushima N37°46′, E140°58′ | Matsushima, Miyagi N38°19′, E141°8′ | 7,887,899 (560,753–1,655,007) | 4,843 | 324 |
Carolina anole (Anolis carolinensis) | Naha, Okinawa N26°13′, E127°41′ | Ogasawara Islands N27°5′, E142°11′ | 6,773,549 (389,990–1,230,227) | 2,354 | 83 |
Lady’s-slipper orchid (Cypripedium macranthos var. rebunense) | Northern Rebun Island N45°24′, E141°0′ | Southern Rebun Island N45°19′, E141°0′ | 3,869,894 (349,500–650,200) | 3,852 | 209 |
