Table 2 Single nucleotide polymorphisms (SNPs) recorded following the mapping of genomic sequence read data to the reference genome for Schistosoma japonicum (SjRef)13.
From: Exploring molecular variation in Schistosoma japonicum in China
Isolate code | Origin(County, Province) | Number of SNPs called | Intergenic SNPs | Exonic SNPs | Intronic SNPs | Non-synonymous SNPs | Synonymous SNPs | Sequencing depth within coding domains a |
|---|---|---|---|---|---|---|---|---|
Sj1 | Jiashan, Zhejiang | 7,156,718 | 4,924,071 (68.80%) | 114,887 (1.61%) | 1,888,984 (26.39%) | 60,072 | 55,206 | 35.98 ± 42.42 |
Sj2 | Guichi, Anhui | 7,336,399 | 5,063,834 (69.02%) | 114,136 (1.56%) | 1,920,936 (26.18%) | 59,157 | 55,378 | 42.94 ± 37.71 |
Sj3 | Yongxia, Jiangxi | 6,936,669 | 4,784,895 (68.98%) | 107,446 (1.55%) | 1,820,674 (26.25%) | 55,316 | 52,507 | 39.80 ± 33.21 |
Sj4 | Wuhan, Hubei | 7,382,882 | 5,090,987 (68.96%) | 116,471 (1.58%) | 1,938,106 (26.25%) | 60,981 | 55,886 | 43.73 ± 40.64 |
Sj5 | Yueyang, Hunan | 7,319,896 | 5,044,716 (68.92%) | 115,692 (1.58%) | 1,924,551 (26.29%) | 60,477 | 55,612 | 40.19 ± 40.69 |
Sj6 | Tianquan, Sichuan | 6,879,937 | 4,767,718 (69.30%) | 108,994 (1.58%) | 1,784,457 (25.94%) | 57,977 | 51,389 | 38.28 ± 52.02 |
Sj7 | Dali, Yunnan | 7,509,073 | 5,196,811 (69.21%) | 121,775 (1.62%) | 1,948,205 (25.94%) | 64,473 | 57,725 | 39.35 ± 38.35 |
