Table 1 Top Candidate SNPs from Enhancer Scanning and EMSA Results.

From: Functional analysis of the 11q23.3 glioma susceptibility locus implicates PHLDB1 and DDX6 in glioma susceptibility

RSID

hg19 coordinates

Tile Location

LD to rs498872

Overlapping Regulatory Elements

rs7125115

chr11:118478330

B

0.268

PHLDB1 promoter

rs12225399

chr11:118480285

B

0.241

PHLDB1 promoter

rs45540840

chr11:118486110

E

0.507

PHLDB1 promoter/enhancer

rs11216930

chr11:118488782

F

0.507

PHLDB1 promoter

rs10892247

chr11:118490076

F

0.507

PHLDB1 promoter

rs2236661

chr11:118499394

H

0.477

PHLDB1 promoter/enhancer

rs10892248

chr11:118501022

H

0.477

PHLDB1 promoter/enhancer

rs73001406

chr11:118560857

N

0.383

Enhancer/CTCF binding

rs10790261

chr11:118579747

P

0.266

H3K27me3 (repression)

rs10892258

chr11:118579865

P

0.266

H3K27me3 (repression)

rs57494551

chr11:118661398

S

0.208

DDX6 promoter