Table 1 Bacteria newly identified within bile samples by WMS/16S sequencing, ranked by WMS genome coverage.

From: Metagenomic sequencing of bile from gallstone patients to identify different microbial community patterns and novel biliary bacteria

Species

Sample No.

Genus in 16S

Species in 16Sa

WGS Genome Coverageb

Pyramidobacter piscolens

1

Yes

Yes

33.13%

Cellulosimicrobium cellulans

1

Yes

No

10.33%

Lactobacillus mucosae

1

Yes

Yes

4.88%

Prevotella pallens

6

Yes

Yes

4.30%

Bifidobacterium dentium

1

Yes

No

4.05%

Gordonia sputi

1

Yes

No

2.33%

Gordonia bronchialis

1

Yes

No

2.04%

Eubacterium infirmum

1

No

No

1.80%

Porphyromonas endodontalis

2

Yes

Yes

1.75%

Streptococcus infantis

5

Yes

No

1.55%

Aggregatibacter segnis

2

Yes

Yes

1.53%

Raoultella ornithinolytica

1

No

No

1.46%

Olsenella uli

1

No

No

1.37%

  1. aSpecies-level OTUs required ≥97% sequence identity with Greengenes references.
  2. bFor species in multiple bile samples, the highest coverage value is shown.
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