Table 1 Summary of data sets used in this study.
From: Systematic comparison of variant calling pipelines using gold standard personal exome variants
Plaform | Accession | Exome Capture | WGS/WES | Exome coverage |
|---|---|---|---|---|
HiSeq2000 | SRR1611178 | SeqCap EZ Human Exome Lib v3.0 | WES | 79.93× |
HiSeq2000 | SRR1611179 | SeqCap EZ Human Exome Lib v3.0 | WES | 79.84× |
HiSeq2000 | SRR292250 | SeqCap EZ Exome SeqCap v2 | WES | 116.06× |
HiSeq2000 | SRR515199 | SureSelect v4 | WES | 298.45× |
HiSeq2000 | SRR098401 | SureSelect v2 | WES | 116.84× |
HiSeq2500 | SRR1611183 | SeqCap EZ Human Exome Lib v3.0 | WES | 129.94× |
HiSeq2500 | SRR1611184 | SeqCap EZ Human Exome Lib v3.0 | WES | 111.90× |
HiSeq2000 | ERR194147 | UCSC Known gene | WGS | 45.68× |
HiSeq2000 | SRX485062 | UCSC Known gene | WGS | 56.60× |
HiSeq2500 | SRX515284 | UCSC Known gene | WGS | 56.87× |
HiSeq2500 | SRX516752 | UCSC Known gene | WGS | 43.61× |
IonProton | NA12878_combine | UCSC Known gene | WGS | 9.87× |
