Table 2 Examples of SNP calling errors.
From: Systematic comparison of variant calling pipelines using gold standard personal exome variants
In a variant call set | In gold standard set | |
|---|---|---|
Ignoring the reference allele (IR) | AA | RA |
Adding the reference allele (AR) | RA | AA |
Other SNP FP calls | AA | AB |
AB | AA | |
RA | RB |
