Table 1 Identification of CMRs based on RRBS data from Encode.

From: CellMethy: Identification of a focal concordantly methylated pattern of CpGs revealed wide differences between normal and cancer tissues

 

Sample

NO.

Length ± SD

NO. CG ± SD

CM ± SD

M ± SD

Normal

H1 ESC

2903

39.6 ± 41.03

6 ± 3

0.65 ± 0.31

0.93 ± 0.29

SF

3533

37.47 ± 38.56

6 ± 2

0.43 ± 0.34

0.78 ± 0.34

HMEC

3316

35.56 ± 33.35

6 ± 2

0.49 ± 0.36

0.70 ± 0.33

SMC

10144

38.09 ± 37.96

6 ± 2

0.19 ± 0.30

0.30 ± 0.36

BL 1

3141

35.74 ± 33.25

6 ± 2

0.52 ± 0.34

0.89 ± 0.27

BL 2

2431

34.85 ± 30.59

6 ± 2

0.43 ± 0.32

0.71 ± 0.28

Pancreas

2790

33.39 ± 30.19

6 ± 2

0.34 ± 0.34

0.51 ± 0.36

Skeleton

3646

36.36 ± 33.75

6 ± 2

0.39 ± 0.35

0.65 ± 0.35

Skin

4702

37.23 ± 37.42

6 ± 3

0.37 ± 0.35

0.52 ± 0.37

Testis

3908

36.99 ± 35.79

6 ± 3

0.34 ± 0.33

0.43 ± 0.36

Uterus

4351

35.88 ± 34.44

6 ± 2

0.37 ± 0.35

0.56 ± 0.37

Normal Mean

4078

36.47

6

0.41

0.63

 

Cancer

Lung

5347

45.74 ± 52.10

7 ± 3

0.65 ± 0.33

0.76 ± 0.27

Colon

7137

49.85 ± 59.29

7 ± 4

0.64 ± 0.35

0.75 ± 0.36

Endometrium

5019

43.64 ± 49.29

7 ± 3

0.57 ± 0.33

0.77 ± 0.26

Neuroblastoma

5598

45.31 ± 54.19

7 ± 4

0.51 ± 0.35

0.69 ± 0.32

AML

6637

50.35 ± 58.80

7 ± 4

0.62 ± 0.34

0.77 ± 0.30

Cervial

7544

58.87 ± 71.41

8 ± 5

0.69 ± 0.29

0.83 ± 0.24

Liver

6345

50.27 ± 61.54

7 ± 4

0.52 ± 0.33

0.73 ± 0.27

PML

5674

38.12 ± 39.70

6 ± 3

0.41 ± 0.37

0.61 ± 0.35

ACL

4886

39.79 ± 41.56

7 ± 3

0.51 ± 0.35

0.71 ± 0.31

CLL

5156

51.66 ± 62.36

7 ± 4

0.46 ± 0.31

0.70 ± 0.26

Prostate

6541

48.21 ± 57.90

7 ± 4

0.48 ± 0.33

0.70 ± 0.29

Breast

11183

64.08 ± 68.72

8 ± 5

0.63 ± 0.31

0.79 ± 0.28

Cancer Mean

6422

48.82

7

0.56

0.73

 
  1. NO.: The number of CMRs whose CM fraction were more than 0, identified from the sample. Length: average length of CMRs corresponding to the sample. SD: standard deviation. NO.CG: average number of CGs in CMRs. CM: average CM fraction of all CMRs corresponding to the sample. M: average methylation level of each sample.