Figure 6
From: Predicting the impact of promoter variability on regulatory outputs
Comparison of global predictions of gene expression using the energy matrices in Fig. 5 to gene expression measured using RNA-Seq.
(A) Predicted vs. experimentally measured BqsR-mediated fold change in expression levels for 75 genes. Black x’s show predicted expression based on the energy matrix shown in Fig. 5B. Blue circles show predicted expression based on the PWM shown in Fig. 5C. (B) Both PWM model and our model made similar predictions of fold change in expression. (C) Error in prediction, defined as the ratio of predicted to experimentally measured fold change in gene expression, plotted as a function of measured fold change in expression.
