Table 2 Phylum-level assignments of operational taxonomic units (OTUs) in the musk pods of unmated and mated Chinese forest musk deer males.
From: The musk chemical composition and microbiota of Chinese forest musk deer males
Class | Phylum | Number of OTUs | Percentage out of total number of OTUs (%) | Number of reads | Percentage out of total number of reads (%) | ||||
---|---|---|---|---|---|---|---|---|---|
MM | UM | MM | UM | MM | UM | MM | UM | ||
Bacteria | Proteobacteria | 351.6ā±ā40.7 a | 133.2ā±ā8.9 b | 32.73 a | 23.19 b | 1948.6ā±ā223.6 a | 774.6ā±ā137.3 b | 29.44 a | 11.88 b |
Ā | Bacteroidetes | 74.6ā±ā9.7 | 52.2ā±ā6.4 | 6.94 | 9.12 | 118.6ā±ā20.8 | 330.8ā±ā84.7 | 1.72 a | 4.92 b |
Ā | Firmicutes | 86.2ā±ā5.4 a | 167ā±ā13.8 b | 8.26 a | 29.11 b | 359.0ā±ā39.3 a | 2112.6ā±ā388.4 b | 5.45 a | 32.32 b |
Ā | Actinobacteria | 52.2ā±ā9.6 | 58.2ā±ā3.2 | 4.72 a | 10.14 b | 362.4ā±ā38.6 a | 1720.0ā±ā280.2 b | 5.50 a | 26.63 b |
Ā | Fusobacteria | 6.2ā±ā0.7 | 5.4ā±ā0.4 | 0.62 | 0.94 | 34.2ā±ā9.1 a | 996.6ā±ā228.7 b | 0.47 a | 14.65 b |
Ā | OD1 | 3.6ā±ā1.3 | 1.0ā±ā0.3 | 0.4 | 0.17 | 4.4ā±ā1.8 | 2.2ā±ā1.0 | 0.08 | 0.03 |
Ā | WS3 | 1ā±ā0.5 | 0.2ā±ā0.2 | 0.08 | 0.03 | 1.4ā±ā0.9 | 0.2ā±ā0.2 | 0.02 | 0.00 |
Ā | Cyanobacteria | 5.2ā±ā0.7 | 6.8ā±ā0.9 | 0.50a | 1.18b | 10.2ā±ā2.2 | 10.6ā±ā1.4 | 0.14 | 0.18 |
Ā | Verrucomicrobia | 8ā±ā2.2 | 2.8ā±ā0.6 | 0.7 | 0.48 | 16.2ā±ā4.2 | 5.8ā±ā1.3 | 0.24 | 0.11 |
Ā | Tenericutes | 3.6ā±ā0.5 | 2.8ā±ā0.5 | 0.35 | 0.49 | 55.2ā±ā9.9 | 18.6ā±ā6.5 | 0.85 | 0.36 |
Ā | Synergistetes | 1.4ā±ā0.2 | 1.2ā±ā0.5 | 0.14 | 0.22 | 1.6ā±ā0.4 | 1.6ā±ā0.7 | 0.02 | 0.02 |
Ā | Spirochaetes | 0.4ā±ā0.2 | 0.2ā±ā0.2 | 0.04 | 0.03 | 0.6ā±ā0.4 | 0.2ā±ā0.2 | 0.01 | 0.00 |
Ā | TM7 | 8.6ā±ā1.5a | 2.6ā±ā0.7b | 0.77 | 0.44 | 15.2ā±ā3.8 | 3.6ā±ā1.3 | 0.21a | 0.06b |
Ā | Planctomycetes | 13.8ā±ā2a | 4.6ā±ā0.4b | 1.29a | 0.81b | 19ā±ā2.7a | 5.4ā±ā0.8b | 0.28a | 0.10b |
Ā | Nitrospira | 3.2ā±ā1.2 | 1.4ā±ā0.4 | 0.24 | 0.25 | 5.6ā±ā1.9 | 1.4ā±ā0.4 | 0.08 | 0.03 |
Ā | Gemmatimonadetes | 20.2ā±ā3.3 | 9.8ā±ā2.1 | 1.84 | 1.73 | 29.4ā±ā5.9 | 11.2ā±ā2.3 | 0.42 | 0.22 |
Ā | Fibrobacteres | 0.4ā±ā0.2 | 0.0ā±ā0.0 | 0.04 | 0 | 0.6ā±ā0.4 | 0.0ā±ā0.0 | 0.01 | 0.00 |
Ā | Elusimicrobia | 1.4ā±ā0.7 | 0.0ā±ā0.0 | 0.11 | 0 | 1.6ā±ā0.8 | 0.0ā±ā0.0 | 0.02 | 0.00 |
Ā | Deinococcus-Thermus | 1ā±ā0.3 | 1.4ā±ā0.5 | 0.09 | 0.25 | 1.6ā±ā0.5 | 1.8ā±ā0.7 | 0.02 | 0.03 |
Ā | Deferribacteres | 0.2ā±ā0.2 | 0.0ā±ā0.0 | 0.01 | 0 | 0.2ā±ā0.2 | 0.0ā±ā0.0 | 0.00 | 0.00 |
Ā | Chrysiogenetes | 0.4ā±ā0.2 | 0.2ā±ā0.2 | 0.03 | 0.03 | 0.8ā±ā0.6 | 0.2ā±ā0.2 | 0.01 | 0.00 |
Ā | Chloroflexi | 10.8ā±ā2.1a | 2.6ā±ā0.2b | 0.98 | 0.45 | 14.0ā±ā3.4 | 2.6ā±ā0.2 | 0.20a | 0.05b |
Ā | Chlorobi | 2ā±ā0.6 | 0.4ā±ā0.2 | 0.17 | 0.07 | 10.2ā±ā1.4a | 0.6ā±ā0.4b | 0.16a | 0.01b |
Ā | Chlamydiae | 2.4ā±ā0.5 | 0.6ā±ā0.2 | 0.24 | 0.1 | 3.6ā±ā0.6 | 1ā±ā0.6 | 0.06 | 0.02 |
Ā | Caldiserica | 0.8ā±ā0.2a | 0.0ā±ā0.0 b | 0.07a | 0.00b | 0.8ā±ā0.2a | 0.0ā±ā0.0b | 0.01a | 0.00b |
Ā | Armatimonadetes | 0.4ā±ā0.2 | 0.6ā±ā0.2 | 0.03 | 0.11 | 0.4ā±ā0.2 | 0.6ā±ā0.2 | 0.00 | 0.01 |
Ā | Acidobacteria | 54.8ā±ā14.3 | 16.8ā±ā2.8 | 4.73 | 2.95 | 73.2ā±ā20.6 | 21.4ā±ā2.9 | 1.00 | 0.39 |
Ā | Bacteria unknown | 39.2ā±ā7.1a | 11.4ā±ā1.6b | 3.53a | 1.98b | 46.6ā±ā8.2a | 12.8ā±ā1.8b | 0.68a | 0.23b |
Archaea | Euryarchaeota | 318.8ā±ā35.3 a | 88.2ā±ā20.1 b | 29.81 a | 15.19 b | 3779.2ā±ā850.7 a | 414.4ā±ā120.5 b | 52.67 a | 7.67 b |
Ā | Crenarchaeota | 3.6ā±ā0.4 | 2.4ā±ā0.2 | 0.36 | 0.41 | 14.4ā±ā5.6 | 4.2ā±ā1.2 | 0.19 | 0.07 |
Ā | Archaea unknown | 1.6ā±ā0.4 | 0.4ā±ā0.2 | 0.15 | 0.06 | 2.0ā±ā0.6 | 1.0ā±ā0.6 | 0.03 | 0.01 |
Unknown | Unknown | 0.6ā±ā0.4 | 0.2ā±ā0.2 | 0.03 | 0.07 | 0.8ā±ā0.6 | 0.2ā±ā0.2 | 0.01 | 0.00 |