Table 1 Summary of the shared recombination breakpoints in CRFs_BC and URFs_BC in China.
HIV-1 genotype | Strain (Reference) name | Location of Strains or reference strains [City/District (Region)] | Shared recombination breakpointsa | Number of recombination breakpoints shared with CRF07_BC and/or CRF08_BC | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
gag | pol | vpr | tat | env | nef | ||||||
Site1 | Site2 | Site3 | Site4 | Site5 | Site6 | Site7 | Site8 | ||||
1215 | 1641 | 3180 | 5694 | 6045 | 6431 | 8873 | 9059 | ||||
CRF07_BC | 97CN54 | Xinjiang | + | + | + | + | + | + | + | + | 8 |
CRF08_BC | 97CNGX_6F | Guangxi | + | + | + | + | + | 5 | |||
CRF57_BC | 341 | Baoshan (Western Yunnan) | + | + | + | 3 | |||||
CRF61_BC | JL100010 | Jilin | + | + | 2 | ||||||
CRF62_BC | YNFL13 | Ruili/Dehong (Western Yunnan) | + | + | 3 | ||||||
CRF64_BC | YNFL31 | Ruili/Dehong (Western Yunnan) | 3 | ||||||||
URFs_BC before 2000 | 96CN.YNRL9607 | Ruili/Dehong (Western Yunnan) | 0 | ||||||||
96CN.YNRL9613 | Ruili/Dehong (Western Yunnan) | + | + | 2 | |||||||
96CN.YNRL9618 | Ruili/Dehong (Western Yunnan) | + | + | 3 | |||||||
96CN.YNRL9828 | Ruili/Dehong (Western Yunnan) | + | 1 | ||||||||
96CN.YN3018b | Ruili/Dehong (Western Yunnan) | + | + | + | 4 | ||||||
96CN.YN4007 | Ruili/Dehong (Western Yunnan) | 0 | |||||||||
96CN.YN4018 | Ruili/Dehong (Western Yunnan) | + | + | 3 | |||||||
Numbers of recombination breakpoints of CRF07_BC and CRF08_BC shared in Yunnan URFs | 3 | 1 | 3 | 4 | 4 | 2 | 4 | 3 | 24 | ||
