Table 5 Single nucleotide polymorphism (SNP) in five grazing upregulated genes involved in three metabolic pathways.
From: Transcriptome responses in alfalfa associated with tolerance to intensive animal grazing
Unigene ID | Pos from 5′ end | Base | Tolerant plants | Intolerant plants | Amino acid | ||||
|---|---|---|---|---|---|---|---|---|---|
MF200401 (grazed) | MF200401-1 (not grazed) | MF200402 (grazed) | change | ||||||
SNP | Base | SNP | Base | SNP | Base | Â | |||
Pathway ko01110 Biosynthesis of secondary metabolites: | |||||||||
K01850 chorismate mutase [EC:5.4.99.5] | |||||||||
CL10594.Contig2_All | 369 | A | — | A | — | A | R | G:A | Synonymous |
Unigene16098_All | 456 | A | — | A | R | A:G | W | A:T | Asn→Ile (T);Asn→Ser (G) |
K15405 cytochrome P450, family 96, subfamily A, polypeptide 15 (midchain alkane hydroxylase) | |||||||||
CL1941.Contig2_All | 451 | A | W | A:T | — | A | W | A:T | Synonymous |
K12373 hexosaminidase [EC:3.2.1.52] | |||||||||
CL4571.Contig3_All | 647 | G | R | G:A | R | G:A | R | G:A | Synonymous |
K00869 mevalonate kinase [EC:2.7.1.36] | |||||||||
Unigene11434_All | 213 | C | Y | C:T | — | C | Y | C:T | 5′ UTR |
Unigene19167_All | 476 | T | K | T:G | — | T | K | G:T | 3′ UTR |
K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] | |||||||||
Unigene4300_All | 174 | C | — | C | — | C | M | C:A | Ser→Tyr |
Pathway ko00511 Other glycan degradation: | |||||||||
K12373 hexosaminidase [EC:3.2.1.52] | |||||||||
CL4571.Contig3_All | 647 | G | R | G:A | R | G:A | R | G:A | Synonymous |
Pathway ko00073 Cutin, suberine and wax biosynthesis: | |||||||||
K15405 cytochrome P450, family 96, subfamily A, polypeptide 15 (midchain alkane hydroxylase) | |||||||||
CL1941.Contig2_All | 451 | A | W | A:T | — | A | W | A:T | Synonymous |
