Table 1 Summary of sequence read alignments to the reference genome.
Summary | Bos frontalis | Bos taurus | |
|---|---|---|---|
Gayal | RAN | JBC | |
Mean depth | 13.06 | 11.94 | 10.34 |
Mismatch rate | 1.22% | 0.48% | 0.57% |
GC content rate | 41.82% | 41.84% | 41.92% |
Coverage rate | 98.44% | 98.65% | 98.71% |
Coverage rate (>=1X) | 98.37% | 98.62% | 98.66% |
Coverage rate (>=4X) | 96.43% | 96.76% | 95.15% |
Coverage rate (>=8X) | 85.92% | 81.68% | 69.94% |
Coverage rate (>=12X) | 57.47% | 45.20% | 28.56% |
Total reads | 362606690 (100%) | 333277352 (100%) | 282866734 (100%) |
Mapped reads | 357292180 (98.53%) | 330198207 (99.08%) | 280354187 (99.11%) |
Reads that are properly paired | 340787139 (93.98%) | 320590349 (96.19%) | 272111559 (96.20%) |
Only one of the reads are mapped | 3690443 (1.02%) | 2248862 (0.67%) | 1940525 (0.69%) |
Reads with mate mapped to a different chromosomes | 5314158 (1.47%) | 3078939 (0.92%) | 2512311 (0.89%) |
unmapped reads | 5314510 (1.47%) | 3079145 (0.92%) | 2512547 (0.89%) |
