Table 2 Functional classification of the detected single nucleotide polymorphisms (SNPs).
SNP | Gayal | RAN | JBC | Total |
|---|---|---|---|---|
Total numbers | 23,828,562 | 5,785,690 | 5,956,686 | 28,493,996 |
Transition/transversion ratio | 2.32 | 2.17 | 2.18 | 2.27 |
Novel rate (%) | 62.24% | 2.53% | 5.10% | 53.23% |
Intergenic | 18,565,897 | 4,601,652 | 4,731,811 | 22,276,335 |
Upstream | 80,850 | 18,804 | 18,623 | 96,119 |
Downstream | 91,649 | 20,039 | 20,967 | 108,248 |
Gene | 5,090,166 | 1,145,195 | 1,185,285 | 6,013,294 |
Intronic | 4,947,017 | 1,111,361 | 1,150,941 | 5,842,593 |
Splicing | 166 | 103 | 96 | 79,507 |
Exonic | 142,983 | 33,731 | 34,248 | 91,194 |
UTR | 66,866 | 15,682 | 15,629 | 208 |
Non-synonymous | 20,499 | 5,652 | 5,897 | 25,401 |
Synonymous | 47,996 | 10,253 | 10,514 | 56,278 |
Stopgain | 62 | 30 | 26 | 93 |
Stoploss | 20 | 8 | 5 | 22 |
Others | 7,540 | 2,106 | 2,177 | 9,192 |
