Table 3 Functional classification of the detected insertions/deletions (InDels).

From: Whole-genome sequencing of the endangered bovine species Gayal (Bos frontalis) provides new insights into its genetic features

InDels

Gayal

RAN

JBC

Total

Total numbers

1,970,270

503,187

461,234

2,352,519

Insertion

932,926

248,943

227,728

1,145,852

Deletion

1,037,344

254,244

233,506

1,206,667

Novel rate

64.50%

9.52%

10.45%

55.78%

Intergenic

1,511,754

396,418

362,585

1,814,875

Upstream

6,927

1,827

1,563

8,327

Downstream

9,148

2,101

1,900

10,753

Gene

442,441

102,841

95,186

518,564

Intronic

434,962

100,678

93,304

509,662

Splicing

178

135

120

245

Exonic

7,301

2,028

1,762

8,655

UTR

6,773

1,732

1,504

8,018

Nonframeshift

193

43

40

228

Frameshift

143

75

65

172

Others

192

178

153

237

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