Table 1 Differentially expressed proteins potentially related to synergistic mechanism.

From: Proteomic response of methicillin-resistant S. aureus to a synergistic antibacterial drug combination: a novel erythromycin derivative and oxacillin

Uniprot_AC

Gene name

Protein name

Fold changes

Cellular location

Pathway

8294+Oxa

Ery+Oxa

A6QJN7

narG

Nitrate reductase, alpha subunit

(−)73.4 (Repression)

(−)6.4

Membrane

Nitrogen metabolism

A5IQF9

adh

Alcohol dehydrogenase

(−)49.1 (Repression)

(−)13.1

CytopPlasmic

Tyrosine metabolism; Fatty acid metabolism; Glycolysis/Gluconeogenesis;

E5QWJ9

HMPREF0772_10696

LPXTG-motif cell wall anchor domain protein

(−)44.1

(−)9.1

Cell wall

 

A5IVI0

nirB

Assimilatory nitrite reductase (NAD(P)H) large subunit (EC 1.7.1.4)

(−)35.8

(−)6.0

Cytoplasmic

 

Q6GGX3

ebh SAR1447

Extracellular matrix-binding protein ebh (ECM-binding protein homolog)

(−)27.7 (Repression)

(−)4.8

Cell wall

 

A8Z0I5

pfl

Formate C-acetyltransferase (EC 2.3.1.54)

(−)27.5

(−)5.3

Cytoplasmic

Butanoate metabolism; Propanoate metabolism; Pyruvate metabolism

E5QTK7

sdrD

Serine-aspartate repeat-containing protein D

(−)24.3

Cell wall

 

A5IUP1

sceD SaurJH9_2132

Transglycosylase domain protein, probable transglycosylase SceD

(−)22.9 (Repression)

(−)12.5 (Repression)

Extracellular

 

A5IVH7

narH

Respiratory nitrate reductase β subunit

(−)21 (Repression)

(−)7.5

CytoplasmicMembrane

Nitrogen metabolism

A5ISU2

SaurJH9_1471

Uncharacterized protein

(−)15.2

(−)5.2

Unknown

 

A5IPA9

ldh1

L-lactate dehydrogenase 1 (L-LDH 1) (EC 1.1.1.27)

(−)11.9

(−)3.5

Cytoplasmic

Cysteine and methionine metabolism; Glycolysis/Gluconeogenesis; Propanoate metabolism; Pyruvate metabolism

E5QSI9

sle

N-acetylmuramoyl-L-alanine amidase Sle1 (EC 3.5.1.28)

(−)7.3

(−)3.5

Cell wall

 

A5IVG3

SaurJH9_2406

Pyridoxamine 5'-phosphate oxidase-related, FMN-binding

(−)6.2

Unknown

 

A5IQZ6

SaurJH9_0817

Cold-shock DNA-binding protein family

(−)5.1

(−)2.9

Cytoplasmic

 

A5IWF1

blaZ

β-Lactamase (EC 3.5.2.6)

(+)4 (Induction)

(+)16.8 (Induction)

Cell wall

β-Lactam resistance

E5QS79

uvrB

UvrABC system protein B (Protein UvrB) (Excinuclease ABC subunit B)

(+)5.3 (Induction)

ND

Cytoplasmic

Nucleotide excision repair

A5IUI6

SaurJH9_2077

PfkB domain protein

(+)5.4

ND

Cytoplasmic

Amino sugar and nucleotide sugar metabolism; Fructose and mannose metabolism; Starch and sucrose metabolism

A5IW34

SaurJH9_2631

AMP-dependent synthetase and ligase

(+)5.5

Cytoplasmic

Carbon fixation pathways in prokaryotes; Glycolysis/Gluconeogenesis; Propanoate metabolism; Pyruvate metabolism

A5IST2

lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (EC 4.1.1.20)

(+)5.5 (Induction)

Cytoplasmic

Lysine biosynthesis

A5ISH1

SaurJH9_1347

Uncharacterized protein

(+)5.7

Cytoplasmic

 

A5ISS3

SaurJH9_1452

Uncharacterized protein-like protein

(+)6.1 (Induction)

(+)3.8 (Induction)

Cytoplasmic

 

A6QFW9

pycA

Pyruvate carboxylase (EC 6.4.1.1)

(+)6.7

ND

Cytoplasmic

Citrate cycle (TCA cycle); Carbon fixation pathways in prokaryotes; Pyruvate metabolism

E5QS29

nadE

NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)

(+)8.4

(+)5.5 (Induction)

Cytoplasmic

Nicotinate and nicotinamide metabolism

A5ISV5

msrA

Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)

(+)8.5

Extracellular

 

A6QI23

prsA

Foldase protein PrsA (EC 5.2.1.8)

(+)9.6

(+)4.3

CytoplasmicMembrane

 

A8Z1L4

purH

Bifunctional purine biosynthesis protein PurH

(+)9.8

ND

Cytoplasmic

One carbon pool by folate; Purine metabolism

A5INS0

mecA

Penicillin binding protein 2a (EC 2.4.1.129)

(+)11.8

(+)42.0

CytoplasmicMembrane

β-Lactam resistance

A5IU99

SaurJH9_1988

ABC transporter related

(+)12.2 (Induction)

ND

CytoplasmicMembrane

ABC transporters

A5ISH6

miaB

(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC 2.-.-.-)

(+)12.8

ND

Cytoplasmic

 

Q6GEW4

mnaA

UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)

(+)13.8

ND

Cytoplasmic

Amino sugar and nucleotide sugar metabolism

A5IV74

ureG

Urease accessory protein UreG

(+)13.9 (Induction)

ND

Cytoplasmic

 

A5INQ7

SaurJH9_0016

Primary replicative DNA helicase (EC 3.6.1.-)

(+)14.7

ND

Cytoplasmic

DNA replication; Alanine, aspartate and glutamate metabolism; Purine metabolism

  1. Cutoff: Fold change (SIPI-8294/Oxa) >5; Fold change (SIPI-8294/Oxa) /Fold change (Ery/Oxa) >1.5 or <0.67. Note: The fold changes with (+) stand for up-regulated proteins and those with (−) stand for down-regulated proteins. The symbol of “−” stands for non-differentially expressed protein and “ND” stands for non-detected protein. The proteins which cannot be detected in the blank but detected in the drug treatment group are considered as “induction”; the proteins which can be detected in the blank but cannot be detected in the drug treatment group are considered as “repression”. For the induction or repression proteins, the spectral counts are set to 1 for non-detected proteins to calculate fold changes.