Table 2 Case specific selection signals identified by haploPS.
From: Detecting signatures of positive selection associated with musical aptitude in the human genome
Chr | Start position | End position | Genetic Distance(cM) | Adjustd haploPS P-value | Estimated frequency | Genes |
|---|---|---|---|---|---|---|
1 | 213862164 | 216608268 | 3.269 | 0.0391 | 0.05 | LINC00538, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A |
1 | 102959259 | 103763252 | 0.356 | 0.0292 | 0.4 | COL11A1 |
2 | 158193407 | 158291539 | 0.176 | 0.0197 | 0.9 | CYTIP |
2 | 112409842 | 113989236 | 1.360 | 0.0342 | 0.1 | ANAPC1, MERTK, TMEM87B, FBLN7, ZC3H8, ZC3H6, RGPD8, TTL, POLR1B, CHCHD5, FLJ42351, SLC20A1, CKAP2L, IL1A, IL1B, IL37, IL36G, IL36A, IL36B, IL36RN, IL1F10, IL1RN, PSD4, PAX8 |
2 | 105982753 | 109034995 | 3.846 | 0.0115 | 0.05 | FHL2, LOC285000, NCK2, C2orf40, UXS1, PLGLA, RGPD3, ST6GAL2, LOC729121, RGPD4, SLC5A7, SULT1C3, SULT1C2, SULT1C2P1, SULT1C4 |
5 | 175136782 | 175202064 | 0.310 | 0.0373 | 0.9 | |
5 | 89001243 | 93774632 | 3.206 | 0.0378 | 0.05 | MIR3660, CETN3, MBLAC2, POLR3G, LYSMD3, GPR98, LUCAT1, ARRDC3, ARRDC3, NR2F1, NR2F1, MIR548AO, FAM172A, MIR2277, POU5F2, KIAA0825 |
6 | 113555945 | 117792143 | 2.872 | 0.0280 | 0.05 | MARCKS, LOC285758, FLJ34503, HDAC2, HS3ST5, FRK, TPI1P3, NT5DC1, COL10A1, TSPYL4, TSPYL1, DSE, FAM26F, TRAPPC3L, FAM26E, FAM26D, RWDD1, RSPH4A, ZUFSP, KPNA5, FAM162B, GPRC6A, RFX6, VGLL2, ROS1 |
12 | 76280316 | 79305654 | 4.981 | 0.0077 | 0.05 | PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1 |
12 | 71139664 | 76116463 | 4.088 | 0.0053 | 0.05 | PTPRR, TSPAN8, LGR5, ZFC3H1, THAP2, TMEM19, RAB21, TBC1D15, MRS2P2, TPH2, TRHDE, TRHDE, LOC100507377, ATXN7L3B, KCNC2, CAPS2, GLIPR1L1, GLIPR1L2, GLIPR1, KRR1 |
14 | 76064624 | 76439634 | 0.246 | 0.0440 | 0.6 | FLVCR2, C14orf1, TTLL5, TGFB3 |
17 | 63154324 | 63353913 | 0.343 | 0.0362 | 0.55 | RGS9 |
