Table 1 Top signaling pathways and their associated molecules.

From: Temporal retinal transcriptome and systems biology analysis identifies key pathways and hub genes in Staphylococcus aureus endophthalmitis

Ingenuity canonical pathways

Molecules

Constitutive

Estrogen Receptor Signaling

TAF4B, THRAP3, TAF5, MED1, MED13L, MED4, TAF15

CD27 Signaling in Lymphocytes

MAP3K12, MAP2K7, IKBKG, IKBKAP

TNFR1 Signaling

IKBKG, MADD, XIAP

Protein Ubiquitination Pathway

DNAJC28, DNAJC24, UBR1, ANAPC5, UBE3A, XIAP, SKP2, DNAJC11

AMPK Signaling

CAB39, PPP2R3A, STRADA, PPP2R2B, RPTOR

Temporal

IL-17A Signaling in Fibroblasts

FOS, JUN, NFKBIA, LCN2, CEBPD, CEBPB, NFKB2, IL6, NFKBIZ, MAPK11

IL-10 Signaling

IL33, FOS, IL4R, JUN, NFKBIA, IL1B, STAT3, IL1R1, NFKB2,IL6, FCGR2B, MAPK11

IL-6 Signaling

IL6R, STAT3, IL1R1, CEBPB, NFKB2, IL6, MAPK11, IL33, FOS, NFKBIA, JUN,PIK3C3,IL1B,ATM,MCL1

JAK/Stat Signaling

FOS, PIK3C3, PIAS1, CDKN1A, CISH, PTPN1, SOCS2, STAT3, IL6, STAT1, ATM

IL-9 Signaling

PIK3C3, CISH, SOCS2, BCL3, STAT3, NFKB2, STAT1, ATM