Table 4 Identified QTLs of the 20 plant architecture and yield related traits of the HJ-DH population in four environments.
From: Genetic dissection of plant architecture and yield-related traits in Brassica napus
Trait | Env. | N. | LOD (min-max) | R2 (sum) | R2 (min-max) | A (+) | A (−) | Consensus QTL | Trait | Env. | N. | LOD (min-max) | R2 (sum) | R2 (min-max) | A (+) | A (−) | Consensus QTL |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PH | WH09 | 4 | 5.74–8.15 | 40.0% | 8.3–12.1% | 3.4 (1) | −8.5 (3) | 20 | MISN | WH09 | 4 | 5.02–14.66 | 37.1% | 5.3–18.7% | 5.0 (2) | −8.0 (2) | 16 |
WH10 | 5 | 3.57–10.48 | 44.1% | 5.2–16.0% | 9.2 (2) | −15.7 (3) | WH10 | 7 | 3.51–19.08 | 86.7% | 5.0–34.2% | 13.9 (5) | −8.7 (2) | ||||
HG10 | 5 | 4.62–14.05 | 56.0% | 5.8–19.2% | 12.0 (3) | −8.1 (2) | HG10 | 6 | 3.51–13.95 | 60.1% | 6.0–17.5% | 14.5 (5) | −3.9 (1) | ||||
GS11 | 7 | 3.50–17.03 | 63.2% | 3.7–23.8% | 9.0 (3) | −15.7 (4) | GS11 | 4 | 3.98–9.86 | 36.6% | 5.8–14.8% | 7.6 (3) | −3.2 (1) | ||||
MIL | WH09 | 3 | 4.25–9.39 | 40.1% | 7.3–18.6% | 3.6 (2) | −2.6 (1) | 16 | BSN | WH09 | 4 | 4.24–9.99 | 36.5% | 6.2–15.8% | −92.2 (4) | 13 | |
WH10 | 9 | 3.28–27.42 | 96.8% | 3.8–51.8% | 14.5 (5) | −8.3 (4) | WH10 | 3 | 4.01–7.95 | 28.9% | 6.7–13.9% | −57.6 (3) | |||||
HG10 | 3 | 6.81–8.56 | 35.4% | 10.7–13.7% | 4.2 (2) | −2.0 (1) | HG10 | 7 | 3.21–6.96 | 67.9% | 6.6–13.4% | 19.6 (1) | −110.5 (6) | ||||
GS11 | 4 | 6.30–8.10 | 34.2% | 7.8–9.6% | 7.2 (3) | −2.4 (1) | GS11 | 1 | 13.48 | 30.4% | 30.4% | −153.6 (1) | |||||
BH | WH09 | 5 | 3.89–14.49 | 63.7% | 7.6–25.7% | 6.7 (2) | −10.2 (3) | 16 | PSN | WH09 | 4 | 3.72–12.41 | 48.9% | 6.3–23.7% | −112.7 (4) | 11 | |
WH10 | 5 | 5.79–22.78 | 60.0% | 6.7–29.0% | 5.8 (1) | −24.8 (4) | WH10 | 3 | 4.27–11.54 | 39.5% | 6.7–19.7% | −79.2 (3) | |||||
HG10 | 6 | 3.87–8.07 | 45.4% | 5.5–11.2% | 11.3 (3) | −11.1 (3) | HG10 | 4 | 3.86–9.07 | 39.8% | 6.5–15.7% | 16.8 (1) | −66.4 (3) | ||||
GS11 | 3 | 7.20–26.44 | 46.2% | 6.2–33.4% | 2.9 (1) | −9.1 (2) | GS11 | 2 | 3.13–13.17 | 35.4% | 6.3–29.1% | −174.0 (2) | |||||
BS | WH09 | 3 | 3.54–7.96 | 24.1% | 5.5–11.6% | −6.0 (3) | 13 | MISNP | WH09 | 3 | 5.57–9.80 | 31.9% | 7.1–13.2% | 0.050 (3) | 9 | ||
WH10 | 3 | 3.84–6.15 | 31.2% | 7.4–13.6% | 2.1 (1) | −4.3 (2) | WH10 | 3 | 3.78–6.31 | 26.3% | 6.9–12.5% | 0.007 (1) | −0.018 (2) | ||||
HG10 | 4 | 5.45–7.97 | 39.0% | 7.5–11.4% | 4.1 (2) | −11.0 (2) | HG10 | 2 | 3.05–3.28 | 12.6% | 6.2–6.3% | 0.017 (2) | |||||
GS11 | 3 | 3.71–7.39 | 25.5% | 5.6–11.5% | 3.4 (2) | −1.9 (1) | GS11 | 1 | 4.33 | 7.6% | 7.6% | 0.012 (1) | |||||
BHP | WH09 | 4 | 4.08–9.56 | 36.0% | 5.6–14.0% | 0.033 (2) | −0.036 (2) | 17 | SSN | WH09 | 3 | 5.58–7.21 | 31.4% | 9.4–12.0% | 33.8 (3) | 17 | |
WH10 | 6 | 3.47–22.34 | 64.9% | 3.5–28.3% | 0.040 (2) | −0.112 (4) | WH10 | 6 | 3.48–11.53 | 66.5% | 6.4–25.1% | 50.0 (4) | −21.0 (2) | ||||
HG10 | 6 | 3.54–6.96 | 40.9% | 3.8–9.0% | 0.034 (2) | −0.063 (4) | HG10 | 7 | 4.45–13.61 | 69.4% | 5.6–21.6% | 59.4 (5) | −18.9 (2) | ||||
GS11 | 5 | 3.30–30.24 | 53.2% | 2.8–37.7% | 0.042 (3) | −0.054 (2) | GS11 | 7 | 3.80–11.97 | 95.0% | 7.8–26.4% | 65.4 (4) | −44.7 (3) | ||||
MILP | WH09 | 4 | 3.44–14.65 | 56.5% | 4.3–20.8% | 0.049 (3) | −0.009 (1) | 18 | TSW | WH09 | 10 | 3.69–15.08 | 71.4% | 4.2–13.6% | 0.674 (5) | −0.602 (5) | 22 |
WH10 | 6 | 3.77–20.76 | 54.1% | 4.1–28.1% | 0.083 (3) | −0.057 (3) | WH10 | 5 | 4.54–8.77 | 47.4% | 7.3–11.3% | 0.389 (3) | −0.279 (2) | ||||
HG10 | 6 | 3.43–16.50 | 54.5% | 3.6–23.5% | 0.050 (4) | −0.027 (2) | HG10 | 6 | 3.78–13.38 | 57.5% | 3.4–15.4% | 0.482 (4) | −0.237 (2) | ||||
GS11 | 5 | 4.13–25.49 | 41.9% | 2.9–22.5% | 0.065 (3) | −0.037 (2) | GS11 | 5 | 4.76–10.66 | 45.5% | 4.7–13.5% | 0.366 (3) | −0.248 (2) | ||||
BSP | WH09 | 6 | 3.45–11.16 | 57.3% | 5.2–19.0% | 0.024 (2) | −0.055 (4) | 15 | BY | WH09 | 4 | 4.33–5.72 | 33.9% | 6.8–9.2% | 1.11 (1) | −3.05 (3) | 11 |
WH10 | 2 | 4.32–7.67 | 23.7% | 8.6–15.1% | 0.011 (1) | −0.019 (1) | WH10 | 4 | 3.50–7.10 | 33.9% | 5.3–11.4% | 2.39 (3) | −0.59 (1) | ||||
HG10 | 4 | 3.51–16.95 | 52.2% | 4.9–28.1% | 0.024 (2) | −0.029 (2) | HG10 | 3 | 4.02–5.33 | 27.8% | 7.9–10.8% | 1.76 (2) | −0.84 (1) | ||||
GS11 | 3 | 6.03–7.94 | 38.9% | 11.8–15.2% | 0.015 (1) | −0.027 (2) | GS11 | 1 | 11.81 | 20.8% | 20.8% | −1.37 (1) | |||||
BN | WH09 | 5 | 4.98–7.74 | 31.3% | 4.9–8.6% | 0.3 (1) | −1.2 (4) | 15 | PY | WH09 | 4 | 3.56–12.34 | 51.2% | 5.6–21.9% | 2.34 (2) | −2.83 (2) | 16 |
WH10 | 4 | 4.16–27.91 | 61.7% | 4.4–40.7% | 0.5 (1) | −1.6 (3) | WH10 | 9 | 3.23–9.38 | 71.5% | 4.6–14.4% | 6.12 (7) | −1.46 (2) | ||||
HG10 | 5 | 3.91–8.10 | 48.5% | 5.8–12.8% | 0.3 (1) | −1.8 (4) | HG10 | 2 | 4.36–8.14 | 24.7% | 8.1–16.6% | 2.48 (2) | |||||
GS11 | 6 | 4.35–21.89 | 78.4% | 4.7–33.6% | 0.3 (1) | −1.6 (5) | GS11 | 1 | 8.17 | 14.6% | 14.6% | −1.27 (1) | |||||
BTL | WH09 | 4 | 3.47–8.94 | 29.0% | 4.3–11.3% | −96.6 (4) | 10 | MIY | WH09 | 3 | 5.35–9.64 | 42.2% | 8.2–19.9% | 0.76 (3) | 18 | ||
WH10 | 3 | 4.88–9.23 | 33.3% | 7.5–15.9% | −83.9 (3) | WH10 | 6 | 3.57–9.52 | 53.4% | 4.8–13.6% | 1.13 (5) | −0.22 (1) | |||||
HG10 | 3 | 3.65–8.86 | 28.1% | 5.9–15.3% | −113.8 (3) | HG10 | 5 | 4.08–7.13 | 49.5% | 6.4–11.4% | 1.28 (5) | ||||||
GS11 | 2 | 5.06–8.43 | 25.6% | 9.2–16.4% | −40.8 (2) | GS11 | 5 | 4.39–8.83 | 42.1% | 5.6–11.9% | 0.71 (3) | −0.58 (2) | |||||
BAL | WH09 | 3 | 4.02–10.31 | 31.4% | 6.5–16.9% | 2.7 (1) | −3.3 (2) | 15 | MIYP | WH09 | 5 | 3.55–9.46 | 58.6% | 5.0–16.8% | 0.121 (5) | 13 | |
WH10 | 6 | 4.18–24.08 | 75.2% | 3.7–28.5% | 14.4 (3) | −9.0 (3) | WH10 | 2 | 3.54–4.89 | 17.0% | 7.5–9.6% | 0.024 (2) | |||||
HG10 | 5 | 3.63–6.57 | 48.0% | 6.6–13.7% | 5.6 (2) | −7.9 (3) | HG10 | 3 | 4.24–5.42 | 28.9% | 7.8–11.6% | 0.023 (2) | −0.010 (1) | ||||
GS11 | 4 | 3.48–9.19 | 34.5% | 5.3–15.1% | 4.3 (2) | −3.7 (2) | GS11 | 3 | 4.11–17.01 | 41.1% | 5.2–25.9% | 0.037 (2) | −0.035 (1) | ||||
Total | 179 | 73 | 106 | 155 | 167 | 99 | 68 | 146 |
