Table 1 Summary statistics of the sequencing and the de novo transcriptome assembly of the Potamotrygon amandae and P. falkneri cDNA samples.

From: Venom gland transcriptome analyses of two freshwater stingrays (Myliobatiformes: Potamotrygonidae) from Brazil

 

P. amandae

P. falkneri

Before pre-processing

 Number of raw reads

14,539,142

15,375,430

 Raw data (bp)

3,357,743,092

3,384,969,885

 Average read length (bp)

231

220

After pre-processing

 Number of high-quality reads

13,109,527

13,730,400

 Clean data (bp)

2,637,602,285

2,627,406,006

 % of reads with Phred score ≥ 33

92.7

92.4

 Average read length (bp)

200

207

Trinity assembly statistics

 Number of contigs

147,881

105,191

 Number of contigs ≥ 1FPKM

75,083

49,219

 Number of contigs ≥ 1 FPKM and containing CDSs

25,092

22,083

 Contigs (bp)

50,987,297

42,504,708

 N50

3,015

2,700

 Average contig length (bp)

2,032

1,924

 Min. contig length (bp)

293

297

 Max. contig length (bp)

15,915

14,247