Table 2 Summary statistics of functional annotation of the Potamotrygon amandae and P. falkneri assembled transcripts.
P. amandae | P. falkneri | |
|---|---|---|
Similarity Search | ||
Contigs with BLAST hit against NCBI nr | 21,245 (84.7%) | 19,316 (87.5%) |
Contigs with BLAST hit against UniprotKB | 17,250 (68.8%) | 15,935 (72.2%) |
Contigs with BLAST hit against NCBI nr and UniprotKB | 17,240 (68.7%) | 15,922 (72.1%) |
Contigs with BLAST hits against UniprotKB Tox-Prot | 426 (1.7%) | 396 (1.8%) |
Contigs without BLAST hits to NCBI or UniprotKB | 3,837 (15.3%) | 2,767 (12.5%) |
Contigs with BLAST hit against Callorhincus milii transcriptome | 15,825 (63.1%) | 14,548 (65.9%) |
Contigs with BLAST hit against Latimeria chalumnae transcriptome | 17,083 (68.1%) | 15,611 (70.7%) |
Contigs with BLAST hit against Danio rerio transcriptome | 17,211 (68.6%) | 15,874 (71.9%) |
Contigs with BLAST hit against Potamotrygon amandae transcriptome | — | 18,423 (83.4%) |
Contigs with BLAST hit against Potamotrygon falkneri transcriptome | 20,020 (79.8%) | — |
Functional Annotation | ||
Contigs with Gene Ontology terms assigned | 16,921 (64.9%) | 15,394 (69.7%) |
Contigs with PFAM terms assigned | 18,130 (72.3%) | 16,387 (74.2%) |
Contigs with InterPro terms assigned | 16,961 (67.6%) | 15,666 (70.9%) |
Contigs with KEGG terms assigned | 14,131 (56.3%) | 13,147 (59.5%) |
Contigs with signal peptide (SignalP 4.1) hits | 1,441 (5.1%) | 1,185 (4.9%) |
Long non-coding RNA (lncRNA) hits in contigs without CDS (PLEK) | 1,913 (3.8%) | 1,611 (5.9%) |
