Table 2 Likelihood ratio test (LRT) statistics for models of variable selective pressure among sites (codon frequency: F3 × 4).
From: The evolutionary history of genes involved in spoken and written language: beyond FOXP2
MAMMALS | ||||
|---|---|---|---|---|
GENES | Model a | − 2ΔlnL b | pValue (Bonferroni corrected) | MEME-BEB sites c |
ATP2C2 | M8a vs M8 | 14.825 | 1.180 × 10−4 | Q412 |
M7 vs M8 | 11.517 | 3.156 × 10−3 | ||
CNTNAP2 (reg2) | M8a vs M8 | 23.894 | 1.018 × 10−6 (2.036 × 10−6) | – |
M7 vs M8 | 12.165 | 2.282 × 10−3 (4.565 × 10−3) | ||
DYX1C1 | M8a vs M8 | 16.610 | 4.592 × 10−5 | K14, C182 |
M7 vs M8 | 29.270 | 4.406 × 10−7 | ||
NFXL1 | M8a vs M8 | 12.237 | 4.684 × 10−4 | T49, G687, T907 |
M7 vs M8 | 71.035 | 3.757 × 10−16 | ||
ROBO2 | M8a vs M8 | 4.156 | 4.148 × 10−2 | – |
M7 vs M8 | 32.032 | 1.107 × 10−7 | ||
AVES | ||||
GENES | Model a | − 2ΔlnL b | p Value (Bonferroni corrected) | MEME-BEB sites d |
ATP2C2 | M8a vs M8 | 7.878 | 5.004 × 10−3 | A7, F79, H933, C940 |
M7 vs M8 | 23.618 | 7.436 × 10−6 | ||
DCDC2 (reg2) | M8a vs M8 | 27.893 | 1.282 × 10−7 (2.564 × 10−7) | L422, T423 |
M7 vs M8 | 42.071 | 7.319 × 10−10 (1.464 × 10−9) | ||
FOXP2 | M8a vs M8 | 11.320 | 3.483 × 10−3 | N228, V376, Q383 |
M7 vs M8 | 8.741 | 3.112 × 10−3 | ||
NFXL1 | M8a vs M8 | 17.001 | 3.735 × 10−5 | P302, I583, S728 |
M7 vs M8 | 33.257 | 6.002 × 10−8 | ||
