Table 2 Assembly statistics after merged assembly of the non-redundant contigs from different k-mers via TGICL.
Velvet | Oases | ABySS | SOAPdenovo | CLC | Trinity | |
|---|---|---|---|---|---|---|
Number of contigs | 191814 | 60426 | 105269 | 139004 | 65193 | 32996 |
Total size (Mb) | 116.84 | 67.75 | 110.22 | 97.45 | 39.25 | 27.47 |
Minimum length (bp) | 200 | 200 | 200 | 200 | 200 | 200 |
Maximum length (bp) | 14710 | 28547 | 25872 | 17121 | 16323 | 20224 |
Average length (bp) | 609.15 | 1121.28 | 1047.05 | 701.05 | 602.07 | 832.4 |
N50 length (bp) | 808 | 1718 | 1404 | 975 | 806 | 1308 |
Contigs with significant hits in rice1 | 56758 | 28060 | 57131 | 50697 | 23630 | 10468 |
Contigs with significant hits in Arabidopsis1 | 50482 | 26034 | 53925 | 46417 | 21141 | 9166 |
