Table 1 Statistics for seven 3C-MTS libraries.
From: Chromatin interactions and candidate genes at ten prostate cancer risk loci
Cell Lines | LnCaP-1 | LnCaP-2 | DU-145 | BPH-1 | RWPE-1 | LCL-29092 | LCL-32370 | Average |
|---|---|---|---|---|---|---|---|---|
raw_reads_pairs | 183,910,322 | 198,631,666 | 194,315,748 | 210,756,996 | 194,265,309 | 202,529,498 | 196,554,517 | 197,167,026 |
Unmapped sequence pairs | 40,690,682 | 37,168,884 | 35,978,070 | 35,107,246 | 39,147,398 | 35,206,879 | 32,411,075 | 34,924,646 |
Mapped sequence pairs | 143,219,640 | 161,462,782 | 158,337,678 | 175,649,750 | 155,117,911 | 167,322,619 | 164,143,442 | 162,242,380 |
Outside target regions | 119,949,803 | 135,712,575 | 102,522,249 | 118,421,990 | 115,548,493 | 128,135,295 | 128,015,247 | 124,067,690 |
On target regions | 23,269,837 | 25,750,207 | 55,815,429 | 57,227,760 | 39,569,418 | 39,187,324 | 36,128,195 | 38,174,690 |
Cis_interactions | 20,754,813 | 23,340,515 | 50,216,052 | 52,175,436 | 34,712,028 | 35,401,140 | 32,694,543 | 34,707,547 |
Trans_interactions | 2,515,024 | 2,409,692 | 5,599,377 | 5,052,324 | 4,857,390 | 3,786,184 | 3,433,652 | 3,467,143 |
% on target pairs | 16.2% | 15.9% | 35.3% | 32.6% | 25.5% | 23.4% | 22.0% | 23.4% |
% Cis | 89.19% | 90.64% | 89.97% | 91.17% | 87.72% | 90.34% | 90.50% | 91.2% |
% Trans | 12.12% | 10.32% | 11.15% | 9.68% | 13.99% | 10.70% | 10.50% | 9.8% |
