Table 1 Genomic distribution of SNPs mined from rice Mediator genes.
Rice chromosomes | Mediator genes annotated | Number (%) of genic SNPs discovered | Regulatory-SNPs | Intronic-SNPs | CDS-SNPs | |
|---|---|---|---|---|---|---|
Non-synonymous | Synonymous | |||||
Os_chr01 | 4 | 484 (12.2) | 84 | 376 | 9 | 15 |
Os_chr02 | 6 | 328 (8.3) | 160 | 121 | 17 | 30 |
Os_chr03 | 5 | 286 (7.2) | 155 | 94 | 5 | 32 |
Os_chr04 | 4 | 504 (12.7) | 166 | 185 | 92 | 61 |
Os_chr05 | 6 | 370 (9.3) | 170 | 147 | 19 | 34 |
Os_chr06 | 1 | 73 (1.8) | 51 | 20 | 0 | 2 |
Os_chr07 | 4 | 263 (6.6) | 108 | 99 | 26 | 30 |
Os_chr08 | 5 | 327 (8.2) | 129 | 131 | 36 | 31 |
Os_chr09 | 6 | 568 (14.3) | 192 | 289 | 39 | 48 |
Os_chr10 | 7 | 324 (8.2) | 127 | 126 | 48 | 23 |
Os_chr11 | 4 | 332 (8.4) | 133 | 150 | 24 | 25 |
Os_chr12 | 3 | 112 (2.8) | 70 | 23 | 8 | 11 |
Total | 55 | 3971 | 1545 (46.7) | 1761 (53.3) | 323 (48.6) | 342 (51.4) |
