Figure 3: Speed of VIP and feasibility for real-time clinical analysis.
From: VIP: an integrated pipeline for metagenomics of virus identification and discovery
(A) a clinical sample from Guangzhou with a febrile status was analyzed using NGS, resulting in VIP detection in a 60-hr timeframe from sample to answer. (B) VIP results suggested primary DENV-1 infection. Percentage coverage of DENV-1 achieved using VIP was 96.32%. Further de novo assembly result showed it was clustered into DENV-1 group (red circle). The reference genome was labeled as blue square.
