Table 1 Summary of eight SNPs used in analysis.
From: SHEsisPlus, a toolset for genetic studies on polyploid species
SNP | Position a | Gene name and function | Allele b | Populations | Allele frequency* |
---|---|---|---|---|---|
Allele CEU CHB | |||||
rs12129861 | 1q21.1 | PDZK1, 5′Intergenic | G/A | European | A 0.460 0.170 |
rs780094 | 2p23.3 | GCKR, Intron16 | G/A | European | A 0.394 0.566 |
rs734553 | 4p10.1 | SLC2A9, Intron7 | A/C | European | C 0.261 0.004 |
rs742132 | 6p22.2 | LRRC16A, Intron34 | T/C | European, Japanese | C 0.301 0.244 |
rs1183201 | 6p22.2 | SLC17A1, Intron 3 | T/A | European | A— |
rs12356193 | 10q21.2 | SLC16A9, Intron 5 | A/G | European | G 0.186 0.141 |
rs17300741 | 11q13.1 | SLC22A11, Intron4 | A/G | European | G 0.531 0.073 |
rs505802 | 11q13.1 | SLC22A12, 5′Intergenic | G/A | European | A 0.726 0.256 |