Table 2 Synonymous (Ks) and nonsynonymous (Ka) nucleotide substitution rates for Arabidopsis thaliana and B. napus LEA protein coding loci.

From: Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus

A. thalianaID

B. napus gene

B. napus ID

LEA family

Ka

Ks

Ka/Ks

one copy loci

 At1g52690

BnLEA14

BnaA08g01460D

LEA_4

0.7067

1.2346

0.5724

 At1g54410

BnLEA15

BnaC03g44340D

Dehydrin

0.0548

0.3803

0.1442

 At2g03740

BnLEA23

BnaC07g22530D

LEA_4

0.1925

0.3826

0.503

 At2g03850

BnLEA24

BnaC02g35130D

LEA_4

0.1862

0.4153

0.4484

 At2g42540

BnLEA43

BnaC03g23770D

LEA_4

0.1632

0.475

0.3437

 At3g22500

BnLEA66

BnaC05g29930D

SMP

0.0709

0.6455

0.1098

 At4g38410

BnLEA88

BnaCnng20790D

Dehydrin

0.2608

0.7055

0.3697

 At5g53270

BnLEA103

BnaC02g14440D

SMP

0.2038

0.688

0.2962

two-copy loci

 At1g01470

BnLEA1

BnaAnng17910D

LEA_2

0.0588

0.5582

0.1053

 

BnLEA2

BnaCnng23520D

LEA_2

0.0683

0.5566

0.1227

 At1g02820

BnLEA3

BnaA10g01410D

LEA_3

0.1498

0.2328

0.6434

 

BnLEA4

BnaC05g01450D

LEA_3

0.1588

0.3306

0.4802

 At1g03120

BnLEA5

BnaA10g01720D

SMP

0.147

0.4696

0.3131

 

BnLEA6

BnaC05g01750D

SMP

0.1408

0.4427

0.318

 At1g20440

BnLEA7

BnaC07g15380D

Dehydrin

0.2334

0.6126

0.381

 

BnLEA8

BnaAnng29030D

Dehydrin

0.3024

0.7686

0.3935

 At1g20450

BnLEA9

BnaA07g11450D

Dehydrin

0.1357

0.6826

0.1988

 

BnLEA10

BnaC05g15780D

Dehydrin

0.1605

0.7191

0.2232

 At1g72100

BnLEA16

BnaA02g15750D

LEA_4

0.1119

0.6431

0.1739

 

BnLEA17

BnaC02g21020D

LEA_4

0.11

0.6099

0.1803

 At2g18340

BnLEA25

BnaA08g15290D

LEA_4

0.3728

3.4912

0.1068

 

BnLEA26

BnaC07g03410D

LEA_4

0.2374

1.2281

0.1933

 At2g23120

BnLEA27

BnaC08g34610D

LEA_6

0.2586

0.6854

0.3772

 

BnLEA28

BnaA09g42180D

LEA_6

0.2666

0.7245

0.368

 At2g35300

BnLEA32

BnaC04g09820D

LEA_1

0.0817

0.4368

0.1871

 

BnLEA33

BnaA05g08680D

LEA_1

0.0795

0.4442

0.179

 At2g42560

BnLEA44

BnaC04g48420D

LEA_4

0.369

1.0387

0.3553

 

BnLEA45

BnaC03g23780D

LEA_4

0.4797

0.9653

0.4969

 At3g51810

BnLEA72

BnaA01g19290D

LEA_5

0.0435

0.3313

0.1312

 

BnLEA73

BnaC01g23250D

LEA_5

0.0316

0.3791

0.0834

 At3g53770

BnLEA74

BnaA04g04540D

LEA_3

0.1791

0.617

0.2903

 

BnLEA75

BnaC04g27000D

LEA_3

0.1745

0.5878

0.297

 At4g39130

BnLEA89

BnaA01g05360D

Dehydrin

0.174

0.5601

0.3107

 

BnLEA90

BnaC01g00220D

Dehydrin

0.177

0.4855

0.3647

 At5g53260

BnLEA101

BnaA02g10350D

SMP

0.1625

0.6361

0.2555

 

BnLEA102

BnaA03g12360D

SMP

0.1581

0.6627

0.2386

three-copy loci

 At1g32560

BnLEA11

BnaA09g24240D

LEA_1

0.1466

0.6935

0.2114

 

BnLEA12

BnaC05g24660D

LEA_1

0.1548

0.6626

0.2337

 

BnLEA13

BnaC05g24760D

LEA_1

0.1548

0.6626

0.2337

 At2g33690

BnLEA29

BnaA04g19670D

LEA_6

0.1035

0.4756

0.2177

 

BnLEA30

BnaC03g18750D

LEA_6

0.1012

0.3467

0.292

 

BnLEA31

BnaC04g44060D

LEA_6

0.1083

0.2579

0.4199

 At2g44060

BnLEA46

BnaA03g20620D

LEA_2

0.0282

0.744

0.0379

 

BnLEA47

BnaC03g24650D

LEA_2

0.0308

0.7655

0.0403

 

BnLEA48

BnaC04g49420D

LEA_2

0.0347

1.9341

0.0179

 At4g15910

BnLEA82

BnaA01g18270D

LEA_3

0.0722

0.4218

0.1712

 

BnLEA83

BnaC01g22200D

LEA_3

0.0981

0.4633

0.2117

 

BnLEA84

BnaAnng29120D

LEA_3

0.2112

0.5351

0.3947

 At4g21020

BnLEA85

BnaA01g10880D

LEA_4

0.1763

0.853

0.2067

 

BnLEA86

BnaA08g09930D

LEA_4

0.1087

0.684

0.1576

 

BnLEA87

BnaC03g64470D

LEA_4

0.1155

0.6272

0.1841

four-copy loci

 At2g36640

BnLEA34

BnaA04g05010D

LEA_4

0.2487

2.1063

0.1181

 

BnLEA35

BnaA05g07720D

LEA_4

0.1621

0.7767

0.2088

 

BnLEA36

BnaC04g08680D

LEA_4

0.1667

0.813

0.205

 

BnLEA37

BnaCnng32920D

LEA_4

0.2532

2.0584

0.123

 At3g15670

BnLEA54

BnaA01g28600D

LEA_4

0.069

0.5519

0.1251

 

BnLEA55

BnaA05g23860D

LEA_4

0.057

0.4961

0.1148

 

BnLEA56

BnaC03g39230D

LEA_4

0.0911

0.6166

0.1477

 

BnLEA57

BnaC05g37670D

LEA_4

0.0691

0.4481

0.1542

 At3g17520

BnLEA58

BnaA03g34560D

LEA_4

0.1528

0.6935

0.2203

 

BnLEA59

BnaC03g40050D

LEA_4

0.1613

0.7164

0.2252

 

BnLEA60

BnaC05g35990D

LEA_4

0.1158

0.6424

0.1802

 

BnLEA61

BnaAnng35040D

LEA_4

0.1353

0.6593

0.2052

 At3g22490

BnLEA62

BnaA03g36660D

SMP

0.2646

0.8118

0.3259

 

BnLEA63

BnaA05g17150D

SMP

0.0539

0.5809

0.0928

 

BnLEA64

BnaC03g42830D

SMP

0.1226

0.5713

0.2146

 

BnLEA65

BnaC05g29980D

SMP

0.0518

0.6093

0.085

 At5g06760

BnLEA91

BnaA10g24180D

LEA_1

0.0781

0.4787

0.1632

 

BnLEA92

BnaA03g55670D

LEA_1

0.0814

0.3857

0.2111

 

BnLEA93

BnaC09g48810D

LEA_1

0.086

0.4548

0.1891

 

BnLEA94

BnaCnng44320D

LEA_1

0.0735

0.3518

0.2089

five-copy loci

 At1g76180

BnLEA18

BnaA02g36030D

Dehydrin

0.1486

0.8539

0.1741

 

BnLEA19

BnaA07g32420D

Dehydrin

0.1058

0.6962

0.152

 

BnLEA20

BnaA07g21490D

Dehydrin

0.1351

0.5254

0.2571

 

BnLEA21

BnaC06g21970D

Dehydrin

0.2061

0.5737

0.3592

 

BnLEA22

BnaC06g36880D

Dehydrin

0.1059

0.7429

0.1425

 At2g40170

BnLEA38

BnaA03g18930D

LEA_5

0.1214

0.5316

0.2283

 

BnLEA39

BnaA04g22520D

LEA_5

0.1706

0.5374

0.3174

 

BnLEA40

BnaA05g34530D

LEA_5

0.0701

0.4639

0.1512

 

BnLEA41

BnaC03g22490D

LEA_5

0.1237

0.5491

0.2253

 

BnLEA42

BnaCnng27950D

LEA_5

0.0699

0.4718

0.1481

 At2g46140

BnLEA49

BnaA03g21280D

LEA_2

0.0615

0.2822

0.218

 

BnLEA50

BnaA05g01660D

LEA_2

0.051

0.2381

0.214

 

BnLEA51

BnaC03g25640D

LEA_2

0.0615

0.3077

0.2

 

BnLEA52

BnaC04g00870D

LEA_2

0.0539

0.2264

0.2381

 

BnLEA53

BnaC04g50740D

LEA_2

0.071

0.3512

0.2022

 At3g50980

BnLEA67

BnaA07g12750D

Dehydrin

0.8386

1.8538

0.4524

 

BnLEA68

BnaA09g43150D

Dehydrin

0.6922

2.0064

0.345

 

BnLEA69

BnaA09g31640D

Dehydrin

0.1638

0.5798

0.2825

 

BnLEA70

BnaC08g35660D

Dehydrin

0.7028

1.8344

0.3831

 

BnLEA71

BnaC08g22390D

Dehydrin

0.1687

0.5994

0.2814

 At5g66400

BnLEA104

BnaA02g34800D

Dehydrin

0.1177

0.7369

0.1597

 

BnLEA105

BnaA09g07980D

Dehydrin

0.1106

0.6754

0.1638

 

BnLEA106

BnaC02g45160D

Dehydrin

0.106

0.7618

0.1391

 

BnLEA107

BnaC09g08130D

Dehydrin

0.1088

0.685

0.1588

 

BnLEA108

BnaCnng27850D

Dehydrin

0.1106

0.6754

0.1638

six-copy loci

 At4g02380

BnLEA76

BnaA02g36510D

LEA_3

0.1184

0.3385

0.3497

 

BnLEA77

BnaA03g26220D

LEA_3

0.0637

0.1885

0.3382

 

BnLEA78

BnaA09g00750D

LEA_3

0.1519

0.3104

0.4894

 

BnLEA79

BnaC02g28140D

LEA_3

0.1249

0.3385

0.369

 

BnLEA80

BnaC03g73200D

LEA_3

0.0519

0.1865

0.2784

 

BnLEA81

BnaCnng19220D

LEA_3

0.1592

0.3073

0.518

 At5g27980

BnLEA95

BnaA06g29020D

SMP

0.1238

0.5246

0.236

 

BnLEA96

BnaA09g03580D

SMP

0.1225

0.6594

0.1858

 

BnLEA97

BnaC02g39520D

SMP

0.1027

0.5201

0.1974

 

BnLEA98

BnaC07g27650D

SMP

0.1172

0.5252

0.2231

 

BnLEA99

BnaC09g02960D

SMP

0.4517

0.8193

0.5513

 

BnLEA100

BnaAnng11440D

SMP

0.1217

0.6119

0.1988

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