Table 1 Oligonucleotide substrates used in the study.

From: Crystal structure and MD simulation of mouse EndoV reveal wedge motif plasticity in this inosine-specific endonuclease

5′ → 3′ sequence

DNA/RNA

Description

CCGUAGAGCUAC[rI]GAUCGGUCACCG

RNA

I-RNA

CGGUGACCGAUCUGUAGCUCUACGG

RNA

Complementary oligo for I-RNA

ACUGGACAAAUACUCCGAGG

RNA

ctr-RNA

CCUCGGAGUAUUUGUCCAGU

RNA

Complementary oligo for ctr-RNA

ACUGGACA[rI][rI]U[rI]CUCCGAGG

RNA

IIUI-RNA

CCUCGGAGU[rI]UUUGUCCAGU

RNA

Complementary oligo for IIUI-RNA

CCGTAGAGCTAC[dI][rG]ATCGGTCACCG

DNA

dIrG-DNA

CCGTAGAGCTAC[dI]GATCGGTCACCG

DNA

I-DNA

CGGTGACCGATCTGTAGCTCTACGG

DNA

Complementary oligo for dIrG/I-DNA