Table 3 Crystal data, data-collection statistics and refinement data.

From: Crystal structure and MD simulation of mouse EndoV reveal wedge motif plasticity in this inosine-specific endonuclease

Data Collection

 Beamline

ID23-2 (ESRF, Grenoble)

 Wavelength (Å)

0.8729

 Space Group

C2221

 Unit-cell parameters (Å, °)

a = 101.63, b = 114.03, c = 54.01

 

α = β = γ = 90

 Resolution (Å)

32.47-1.75 (1.78-1.75)a

 Unique reflections

32035 (1744)

 Completeness (%)

99.9 (99.7)

 Multiplicity

4.0 (3.9)

 Mean I/σI

11.0 (3.0)

 Rmeas (all I+ and I)b

0.098 (0.537)

Refinement statistics

 Resolution of data used in refinement (Å)

32.47–1.75

 Reflections used in refinement

31483

 Completeness (%)

98.2

 Rcryst/Rfree (%)c

16.5/19.0

 R.m.s.d. bonds (Å)

0.007

 R.m.s.d. angles (°)

1.19

 Average B-factor (protein/solvent) (Å2)

24.3/38.4

Number of atoms

 Protein

1896

 Solvent

302

Ramachandran plot (%)d

 Favorable region

98.4

 Additionally allowed

1.2

 Outliers

0.4

  1. aValues in parentheses are for the highest resolution shells.
  2. bRmeas defined by Diederichs & Karplus44.
  3. cRcryst = Σhkl ||FO|-|FC||/Σhkl |FO| where FO and FC are the observed and calculated structure factor amplitudes, respectively. Rfree is calculated from a randomly chosen 5.08% set of unique reflections not used in refinement.
  4. dDefined using MolProbity45.