Table 2 The best partition scheme selected by PartitionFinder for each dataset used in phylogenetic analyses.

From: Multilocus phylogenetic analyses reveal unexpected abundant diversity and significant disjunct distribution pattern of the Hedgehog Mushrooms (Hydnum L.)

Dataset

MrBayes

RAxML

Partition scheme

Model

Partition scheme

Model

ITS

ITS1; ITS2

HKY + G

ITS1; ITS2

GTR + G

5.8 S

K80 + I

5.8 S

GTR + I + G

nrLSU

full

HKY + I + G

Full

GTR + I + G

rpb1

codon 1

HKY + I

codon 1, 2

GTR + G

codon 2

K80

codon 3

GTR + G

codon 3

HKY

  

tef1α

codon 1, 2

K80 + I + G

codon 1, 2

GTR + I + G

condon 3

HKY + G

codon 3

GTR + G

3-gene

rpb1_codon 1; tef1α_codon 1

HKY + I + G

rpb1_codon 1, 2; tef1α_codon 1, 2

GTR + I + G

tef1α_codon2

JC + I

rpb1_codon 3; tef1α_codon 3

GTR + G

rpb1_codon 3; tef1α_codon 3

HKY + G

nrLSU

GTR + I + G

nrLSU

HKY + I + G

  

rpb1_codon2

K80

   
Back to article page