Table 1 Representative enriched categories with some of their DAP components.

From: Proteome-wide alterations on adipose tissue from obese patients as age-, diabetes- and gender-specific hallmarks

 

p value

UniProt

Protein name

Symbol

Zq

Age comparison

Extracellular matrix (GO:0031012)

0.00

P14780

Matrix metalloproteinase-9

MMP9

4.25

Q12805

EGF-containing fibulin-like extracellular matrix protein 1

EFEMP1

3.54

P55268

Laminin subunit beta-2

LAMB2

2.90

P51888

Prolargin

PRELP

2.64

P02462

Collagen alpha-1(IV) chain

COL4A1

2.45

P12110

Collagen alpha-2(VI) chain

COL6A2

2.37

Chromatin assembly or disassembly (GO:0006333)

0.00

P16401

Histone H1.5

HIST1H1B

−2.16

P62805

Histone H4

HIST1H4A

−2.69

Q02539

Histone H1.1

HIST1H1A

−3.04

Mitochondrial part (GO:0044429)

0.04

Q8NC60

Nitric oxide-associated protein 1

NOA1

−2.20

P06241

Tyrosine-protein kinase Fyn

FYN

−2.21

P24310

Cytochrome c oxidase subunit 7A1, mitochondrial

COX7A1

−2.22

Q9NS69

Mitochondrial import receptor subunit TOM22 homolog

TOMM22

−2.27

P51970

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NDUFA8

−2.28

P53007

Tricarboxylate transport protein, mitochondrial

SLC25A1

−2.42

T2DM comparison

Calcium ion binding (GO:0005509)

0.00

P06702

Protein S100-A9

S100A9

3.61

P07996

Thrombospondin-1

THBS1

3.25

P05109

Protein S100-A8

S100A8

3.05

P55083

Microfibril-associated glycoprotein 4

MFAP4

2.81

P13796

Plastin-2

LCP1

2.06

P06703

Protein S100-A6

S100A6

2.02

Mitochondrion (GO:0005739)

0.00

P99999

Cytochrome c

CYCS

−2.01

O75964

ATP synthase subunit g, mitochondrial

ATP5L

−2.02

P50213

Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial

IDH3A

−2.04

O75947

ATP synthase subunit d, mitochondrial

ATP5H

−2.11

Q5VTU8

ATP synthase subunit epsilon-like protein, mitochondrial

ATP5EP2

−2.12

O75390

Citrate synthase, mitochondrial

CS

−2.27

Q02252

Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

ALDH6A1

−2.27

P05091

Aldehyde dehydrogenase, mitochondrial

ALDH2

−2.29

Q5VT66

Mitochondrial amidoxime-reducing component 1

MARC1

−2.43

P38117

Electron transfer flavoprotein subunit beta

ETFB

−2.44

Gender comparison

Inflammatory response (GO:0006954)

0.00

P02763

Alpha-1-acid glycoprotein 1

ORM1

5.44

P04003

C4b-binding protein alpha chain

C4BPA

3.67

P05155

Plasma protease C1 inhibitor

SERPING1

3.15

P10909

Clusterin

CLU

2.73

P02751

Fibronectin

FN1

2.42

Oxidation reduction (GO:0055114)

0.01

P49327

Fatty acid synthase

FASN

5.59

Q53TN4

Cytochrome b reductase 1

CYBRD1

4.35

P00450

Ceruloplasmin

CP

4.21

P07203

Glutathione peroxidase 1

GPX1

2.94

O75891

Cytosolic 10-formyltetrahydrofolate dehydrogenase

ALDH1L1

2.69

P22352

Glutathione peroxidase 3

GPX3

2.03

Oxidation reduction (GO:0055114)

0.00

P40939

Trifunctional enzyme subunit alpha, mitochondrial

HADHA

−2.03

Q13162

Peroxiredoxin-4

PRDX4

−2.73

P00441

Superoxide dismutase [Cu-Zn]

SOD1

−2.81

P00352

Retinal dehydrogenase 1

ALDH1A1

−3.08

P07195

L-lactate dehydrogenase B chain

LDHB

−3.09

P21397

Amine oxidase [flavin-containing] A

MAOA

−3.16

P08294

Extracellular superoxide dismutase [Cu-Zn]

SOD3

−3.74

Q92781

11-cis retinol dehydrogenase

RDH5

−6.65

Glutathione transferase activity (GO:0004364)

0.00

P09211

Glutathione S-transferase P

GSTP1

−2.35

P28161

Glutathione S-transferase Mu 2

GSTM2

−2.55

P30711

Glutathione S-transferase theta-1

GSTT1

−3.49

P09488

Glutathione S-transferase Mu 1

GSTM1

−5.63

  1. Functional categories were retrieved from the DAVID database. The p value for each term is shown. Relative abundance change of proteins is indicated with the corresponding Zq value for each comparison. These values can also be found in the extended Supplementary Table S3, where a colour scale in red and blue colours is represented for up- and down-regulated proteins, respectively.