Table 1 Nine component networks incorporated into PseudomonasNet.
Code | Description | # of genes | # of links |
|---|---|---|---|
PA-CC | Links inferred by co-citation across PubMed central articles for P. aeruginosa | 2,673 | 72,947 |
PA-CX | Links inferred by co-expression across gene expression profiles of the GEO database | 4,271 | 49,483 |
PA-DP | Links inferred by the correlation of protein domain profiles of P. aeruginosa coding genes | 2,589 | 5,000 |
PA-GN | Links inferred by the neighbourhood of P. aeruginosa orthologues in bacterial genomes | 4,022 | 32,000 |
PA-PG | Links inferred by the correlation of phylogenetic profiles of P. aeruginosa genes | 2,031 | 31,496 |
EC-CC | Associalogs of links inferred by co-citation across PubMed central articles for E. coli biology | 1,403 | 26,484 |
EC-CX | Associalogs of links inferred by co-expression across E. coli gene expression profiles of GEO database | 1,999 | 37,483 |
BA-HT | Associalogs of bacterial protein-protein interactions derived from high-throughput analysis | 1,768 | 12,361 |
BA-LC | Associalogs of bacterial protein-protein interactions derived from the literature curation of small-scale analyses | 626 | 893 |
PseudomonasNet | Integrated network of the nine component networks | 5,456 | 203,118 |
