Table 2 Results of transposable elements variants annotation using Snpeff.
Region Type | Gyeongbuk Araucana | Leghorn | Korean native Chicken |
|---|---|---|---|
Downstream | 2067 | 4174 | 14619 |
Exon | 11 | 28 | 48 |
Intergenic | 14059 | 30101 | 128283 |
Intron | 7890 | 18947 | 91577 |
None | 17 | 21 | 36 |
Splice site acceptor | 4 | 13 | 33 |
Splice site donor | 7 | 14 | 29 |
Splice site region | 44 | 81 | 288 |
Upstream | 2688 | 5169 | 14997 |
UTR 3′ | 156 | 292 | 1298 |
UTR 5′ | 108 | 207 | 236 |
Total | 22033 | 48797 | 216315 |
