Table 2 General features of six A. baumannii genomes.
Characteristic | Group 1 (Patient I) | Group 2 (Patient II) | Group 3 (Patient III) | |||
|---|---|---|---|---|---|---|
2015ZJAB1 | 2015ZJAB2 | 2015ZJAB3 | 2015ZJAB4 | 2015ZJAB7 | 2015ZJAB8 | |
Source | sputum | sputum | sputum | bile | drain fluid | drain fluid |
date to collect | 2014 Jan 13 | 2014 Jan 28 | 2014 Feb 21 | 2012 Sep 22 | 2013 Jan 4 | 2013 Jan 14 |
Clean reads No. | 7269296 | 7462466 | 7420560 | 8022386 | 6823616 | 7751334 |
Reads length/bp | 90 | 90 | 90 | 90 | 90 | 90 |
Clean bases/bp | 654236640 | 671621940 | 667850400 | 722014740 | 614125440 | 697620060 |
Genome size/bp | 3954957 | 3964372 | 3943968 | 3942129 | 4101209 | 4076260 |
N50/bp | 177993 | 177950 | 177986 | 184628 | 176354 | 176352 |
N90/bp | 50999 | 50405 | 72813 | 48099 | 41163 | 41159 |
Scaffold No. | 56 | 53 | 41 | 53 | 67 | 62 |
Contig No. | 59 | 58 | 45 | 57 | 76 | 66 |
GC content/% | 38.91 | 38.92 | 38.99 | 38.82 | 39.05 | 39.02 |
CDS No. | 3,747 | 3,753 | 3,708 | 3,709 | 3,909 | 3,881 |
tRNAs No. | 68 | 67 | 64 | 67 | 70 | 68 |
rRNAs No. | 4 | 4 | 3 | 4 | 4 | 3 |
