Table 1 Mapping of enrichment reads.
Sample & Enrichment | Total Reads | Mapped % | Exome Overlap % | Mapped with MST % | Known MST Loci called % | Unmapped % | Unmapped with MST% |
---|---|---|---|---|---|---|---|
DLD-1- Exome | 107763705 | 99.9 | 53.7 | 7.3 | 44.4 | 0.1 | 1.6 |
DLD-1 - GME | 99869840 | 99.6 | 2.9 | 15.7 | 61.7 | 0.4 | 2.8 |
DLD-1 - Comb | 86571454 | 99.8 | 52.3 | 12.1 | 41.1 | 0.2 | 4.2 |
SW403 - Exome | 99392535 | 99.9 | 57.3 | 6.8 | 41.2 | 0.1 | 1.8 |
SW403 - GME | 93042396 | 99.1 | 2.3 | 67.4 | 11.7 | 0.9 | 3.8 |
SW403 - Comb | 95846052 | 99.7 | 51.7 | 12.0 | 27.3 | 0.3 | 3.3 |
Normal-1-GME | 107184846 | 99.2 | 1.8 | 86.7 | 33.3 | 0.8 | 1.1 |
Normal-2-GME | 86039208 | 98.4 | 1.9 | 87.5 | 26.3 | 1.6 | 0.5 |
Normal-3-GME | 77776824 | 98.1 | 1.9 | 88.6 | 23.3 | 1.9 | 0.4 |
Normal-4-GME | 76888422 | 99.0 | 2.0 | 89.1 | 23.1 | 1.0 | 0.9 |
Normal-5-GME | 88088498 | 97.6 | 2.1 | 87.1 | 26.1 | 2.4 | 0.5 |
Normal-6-GME | 87529722 | 97.7 | 2.0 | 87.7 | 25.9 | 2.3 | 0.4 |
Normal-7-GME | 85362982 | 98.8 | 2.0 | 86.5 | 26.7 | 1.2 | 0.7 |
Normal-8-GME | 69912104 | 98.3 | 1.8 | 88.7 | 24.1 | 1.7 | 0.6 |
Normal-9-GME | 89072202 | 99.1 | 1.8 | 83.5 | 36.8 | 0.9 | 0.7 |
Normal-10-GME | 88599848 | 99.1 | 1.9 | 87.0 | 30.6 | 0.9 | 0.7 |
Normal-11-GME | 67477542 | 99.1 | 1.9 | 87.1 | 27.0 | 0.9 | 1.1 |
Normal-12-GME | 74895624 | 98.4 | 2.1 | 87.6 | 27.3 | 1.6 | 0.5 |
Normal-13-GME | 102597820 | 98.3 | 2.0 | 89.1 | 29.3 | 1.7 | 0.5 |
Normal-14-GME | 39497576 | 98.5 | 1.8 | 89.6 | 22.4 | 1.5 | 0.6 |
Normal-15-GME | 97582298 | 99.3 | 1.8 | 88.1 | 29.3 | 0.7 | 1.3 |
Normal-16-GME | 91613940 | 98.1 | 1.8 | 86.7 | 32.0 | 1.9 | 0.6 |