Table 3 Alignment analysis of concordant contigs with normal lymphoblastoid RNA-Seq samples.

From: Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome

#

RNA-Seq samples

Total aligned reads

Contig length

BLAST hit

1

2

3

4

5

6

7

8

9

10

1

9441

17648

208

31

6957

15064

7134

2005

12173

7

70668

370

HS clone. Chr21

2

24

76

77

7

26

33

19

63

32

11

368

615

HS FOSMID clone. Chr7

3

24

67

75

7

21

33

20

61

32

11

351

628

HS FOSMID clone. Chr7

4

24

69

75

7

21

33

19

60

32

11

351

624

HS FOSMID clone. Chr7

5

55

38

28

11

4

48

0

48

46

26

304

531

HS FOSMID clone. Chr17

6

25

67

43

4

23

23

16

52

29

14

296

310

PT BAC clone. Chr7

7

18

25

38

5

57

36

35

7

30

24

275

303

HS BAC clone. Chr17

8

22

66

42

4

19

18

13

52

22

13

271

314

PT BAC clone. Chr7

9

21

66

41

4

16

18

13

51

21

13

264

323

PT BAC clone. Chr7

10

19

61

39

4

18

12

11

44

16

11

235

289

PT BAC clone. Chr7

  1. The top 10 out of 37 concordant contigs that had RNA-Seq hits are presented in this table.
  2. HS: Homo sapiens; PT: Pan troglodytes; Chr: chromosome.
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