Table 4 ESTs used for validation of gene expression profile of T. aestivum transcriptome data.
From: Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local
Unigene_ID | Length (bp) | CWR_RPKM | TWR_RPKM | Fold Change | Gene description | Accession No. of homolog (Organism) | E-Value |
|---|---|---|---|---|---|---|---|
comp3309_c0_seq1 | 490 | – | – | – | Actin 1 | EMS62134 (T.urartu) | 2.34E-114 |
comp9193_c0_seq1 | 1028 | 14.84 | 22.183 | 1.495 | Salt responsive protein | ABG75754.1 (T. aestivum) | 1.81E-79 |
comp511_c0_seq1 | 1327 | 22.992 | 34.37 | 1.495 | Na+/H+ antiporter | AAK76737.1 (T. aestivum) | 4.01E-134 |
comp7516_c0_seq1 | 1140 | 6.691 | 20.004 | 2.99 | Zinc C3HC4 type family protein | BAJ89228.1 (H. vulgare) | 5.98E-143 |
comp4786_c0_seq6 | 541 | 14.099 | 56.203 | 3.986 | ATP-citrate synthase | XP_003579058.1 (B. distachyon) | 1.34E-69 |
comp8612_c0_seq1 | 776 | 9.829 | 29.387 | 2.99 | Calcineurin b-like protein 2 | EMS57734.1 (T. urartu) | 3.39E-119 |
comp6597_c0_seq1 | 851 | 8.963 | 35.73 | 3.986 | WD-40 repeat | EMT05171.1 (A. tauschii) | 1.77E-143 |
comp4247_c0_seq1 | 209 | 0 | 0 | 1 | Cold shock protein-1 | BAD08701.1 (T. aestivum) | 1.09E-28 |
comp2115_c0_seq1 | 665 | 11.47 | 80.016 | 6.976 | Glutathione S-Transferase | XP_003575165.1 (B. distachyon) | 1.03E-118 |
